Examples with Scheduled org.springframework.scheduling.annotation.Scheduled used on opensource projects

Example 46 with Scheduled

use of org.springframework.scheduling.annotation.Scheduled in project oncotree by cBioPortal.

the class MSKConceptCache method resetCache.

// call when constructed
@PostConstruct
// call every Sunday at 3am
@Scheduled(cron = "0 0 3 * * SUN")
private void resetCache() {
    logger.info("resetCache() -- clearing Crosswalk MSKConcept cache and refilling");
    oncoTreeCodesToMSKConcepts.clear();
    // versions are ordered in ascending order by release date
    for (Version version : VersionUtil.getVersions()) {
        List<OncoTreeNode> oncoTreeNodes = oncoTreeRepository.getOncoTree(version);
        for (OncoTreeNode node : oncoTreeNodes) {
            MSKConcept mskConcept = getFromCrosswalkAndSave(node.getCode());
            // get all codes defined so far for this topbraid uri and save in history
            if (topBraidURIsToOncotreeCodes.containsKey(node.getURI())) {
                // do not add this code to the history, but add any others
                HashSet<String> allButThisNode = new HashSet<String>(topBraidURIsToOncotreeCodes.get(node.getURI()));
                allButThisNode.remove(node.getCode());
                mskConcept.addHistory(allButThisNode);
            } else {
                topBraidURIsToOncotreeCodes.put(node.getURI(), new HashSet<String>());
            }
            // now save this as onoctree code history for this topbraid uri
            topBraidURIsToOncotreeCodes.get(node.getURI()).add(node.getCode());
        }
    }
}

Example 47 with Scheduled

use of org.springframework.scheduling.annotation.Scheduled in project molgenis by molgenis.

the class GavinController method cleanUp.

/**
 * Removes old files in the gavin working directory from the file store.
 */
@Scheduled(cron = "0 0 * * * *")
public void cleanUp() {
    LOG.debug("Clean up old jobs in the file store...");
    try {
        final File[] oldFiles = fileStore.getFile(GAVIN_APP).listFiles(file -> file.isDirectory() && MILLISECONDS.toSeconds(file.lastModified()) < now().minusHours(24).toEpochSecond());
        if (oldFiles != null) {
            for (File file : oldFiles) {
                LOG.info("Deleting job directory {}", file.getName());
                fileStore.deleteDirectory(GAVIN_APP + separator + file.getName());
            }
        }
        LOG.debug("Done.");
    } catch (IOException e) {
        LOG.error("Failed to clean up working directory", e);
    }
}

Example 48 with Scheduled

use of org.springframework.scheduling.annotation.Scheduled in project hello-world by haoziapple.

the class UserService method removeNotActivatedUsers.

/**
 * Not activated users should be automatically deleted after 3 days.
 * <p>
 * This is scheduled to get fired everyday, at 01:00 (am).
 */
@Scheduled(cron = "0 0 1 * * ?")
public void removeNotActivatedUsers() {
    List<User> users = userRepository.findAllByActivatedIsFalseAndCreatedDateBefore(Instant.now().minus(3, ChronoUnit.DAYS));
    for (User user : users) {
        log.debug("Deleting not activated user {}", user.getLogin());
        userRepository.delete(user);
    }
}

Example 49 with Scheduled

use of org.springframework.scheduling.annotation.Scheduled in project molgenis by molgenis.

the class IndexJobSchedulerImpl method cleanupJobExecutions.

/**
 * Cleans up successful IndexJobExecutions that finished longer than five minutes ago.
 * delay for a minute to allow the transaction manager to become available
 */
@Scheduled(initialDelay = 1 * 60 * 1000, fixedRate = 5 * 60 * 1000)
public void cleanupJobExecutions() {
    runAsSystem(() -> {
        LOG.trace("Clean up Index job executions...");
        Instant fiveMinutesAgo = Instant.now().minus(5, ChronoUnit.MINUTES);
        boolean indexJobExecutionExists = dataService.hasRepository(IndexJobExecutionMeta.INDEX_JOB_EXECUTION);
        if (indexJobExecutionExists) {
            Stream<Entity> executions = dataService.getRepository(IndexJobExecutionMeta.INDEX_JOB_EXECUTION).query().lt(END_DATE, fiveMinutesAgo).and().eq(STATUS, SUCCESS.toString()).findAll();
            dataService.delete(IndexJobExecutionMeta.INDEX_JOB_EXECUTION, executions);
            LOG.debug("Cleaned up Index job executions.");
        } else {
            LOG.warn(IndexJobExecutionMeta.INDEX_JOB_EXECUTION + " does not exist");
        }
    });
}

Example 50 with Scheduled

use of org.springframework.scheduling.annotation.Scheduled in project goci by EBISPOT.

the class NewWeeklyReportService method createWeeklyReports.

@Scheduled(cron = "0 30 0 * * MON")
public void createWeeklyReports() {
    log.info("Creating weekly reports ...");
    double sTime = System.currentTimeMillis();
    List<String> pmids = publicationRepository.findAllPubmedIds();
    Map<String, List<String>> allPublications = new HashMap<>();
    Map<String, List<String>> openTargetsPublications = new HashMap<>();
    for (String pmid : pmids) {
        boolean isOT = false;
        Collection<Study> studies = studyRepository.findTop10ByPublicationIdPubmedId(pmid);
        List<String> ids = new ArrayList<>();
        for (Study study : studies) {
            if (study.getOpenTargets() != null) {
                if (study.getOpenTargets().booleanValue()) {
                    isOT = true;
                }
            }
            ids.add(Long.toString(study.getId()));
        }
        allPublications.put(pmid, ids);
        if (isOT) {
            openTargetsPublications.put(pmid, ids);
        }
    }
    Calendar todayCalendar = Calendar.getInstance();
    Date today = todayCalendar.getTime();
    int weekCode = todayCalendar.get(Calendar.WEEK_OF_YEAR);
    try {
        createSpecificWeeklyReports(allPublications, ALL, today, weekCode);
        createSpecificWeeklyReports(openTargetsPublications, OPEN_TARGETS, today, weekCode);
    } catch (Exception e) {
        log.error("ERROR: Unable to create weekly reports: {}", e.getMessage(), e);
        mailService.sendWeeklyReportErrorCreationEmail(StringUtils.join(Arrays.asList(e.getStackTrace()), "\n"));
    }
    double eTime = System.currentTimeMillis();
    double total = (eTime - sTime) / 1000;
    log.info("Done creating weekly reports: {}s", total);
}