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Example 61 with SequencingObject

use of ca.corefacility.bioinformatics.irida.model.sequenceFile.SequencingObject in project irida by phac-nml.

the class SequencingObjectConcatenatorFactoryTest method testGetConcatenatorMixedError.

@Test(expected = IllegalArgumentException.class)
public void testGetConcatenatorMixedError() {
    Set<SequencingObject> fileSet = Sets.newHashSet(new SequenceFilePair(), new SingleEndSequenceFile(null));
    SequencingObjectConcatenatorFactory.getConcatenator(fileSet);
}
Also used : SequenceFilePair(ca.corefacility.bioinformatics.irida.model.sequenceFile.SequenceFilePair) SequencingObject(ca.corefacility.bioinformatics.irida.model.sequenceFile.SequencingObject) SingleEndSequenceFile(ca.corefacility.bioinformatics.irida.model.sequenceFile.SingleEndSequenceFile) Test(org.junit.Test)

Aggregations

SequencingObject (ca.corefacility.bioinformatics.irida.model.sequenceFile.SequencingObject)61 SingleEndSequenceFile (ca.corefacility.bioinformatics.irida.model.sequenceFile.SingleEndSequenceFile)29 SequenceFile (ca.corefacility.bioinformatics.irida.model.sequenceFile.SequenceFile)25 Sample (ca.corefacility.bioinformatics.irida.model.sample.Sample)24 Test (org.junit.Test)24 SampleSequencingObjectJoin (ca.corefacility.bioinformatics.irida.model.sample.SampleSequencingObjectJoin)16 SequenceFilePair (ca.corefacility.bioinformatics.irida.model.sequenceFile.SequenceFilePair)14 WithMockUser (org.springframework.security.test.context.support.WithMockUser)14 RequestMapping (org.springframework.web.bind.annotation.RequestMapping)12 Project (ca.corefacility.bioinformatics.irida.model.project.Project)11 AnalysisFastQC (ca.corefacility.bioinformatics.irida.model.workflow.analysis.AnalysisFastQC)11 AnalysisSubmission (ca.corefacility.bioinformatics.irida.model.workflow.submission.AnalysisSubmission)10 SequencingRun (ca.corefacility.bioinformatics.irida.model.run.SequencingRun)8 Path (java.nio.file.Path)8 ModelMap (org.springframework.ui.ModelMap)8 PreAuthorize (org.springframework.security.access.prepost.PreAuthorize)6 Transactional (org.springframework.transaction.annotation.Transactional)6 IOException (java.io.IOException)5 List (java.util.List)5 Logger (org.slf4j.Logger)5