Examples with User de.tudarmstadt.ukp.clarin.webanno.security.model.User used on opensource projects

Example 16 with User

use of de.tudarmstadt.ukp.clarin.webanno.security.model.User in project webanno by webanno.

the class CopyAnnotationTest method copySpanWithSlotWithStackingTest.

@Test
public void copySpanWithSlotWithStackingTest() throws Exception {
    AnnotatorState state = new AnnotatorStateImpl(Mode.CURATION);
    state.setUser(new User());
    slotLayer.setAllowStacking(true);
    JCas jcasA = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem("f1"));
    Type type = jcasA.getTypeSystem().getType(DiffUtils.HOST_TYPE);
    Feature feature = type.getFeatureByBaseName("f1");
    AnnotationFS clickedFs = DiffUtils.makeLinkHostMultiSPanFeatureFS(jcasA, 0, 0, feature, "A", DiffUtils.makeLinkFS(jcasA, "slot1", 0, 0));
    JCas mergeCAs = JCasFactory.createJCas(DiffUtils.createMultiLinkWithRoleTestTypeSytem("f1"));
    DiffUtils.makeLinkHostMultiSPanFeatureFS(mergeCAs, 0, 0, feature, "C", DiffUtils.makeLinkFS(mergeCAs, "slot1", 0, 0));
    MergeCas.addSpanAnnotation(state, annotationSchemaService, slotLayer, mergeCAs, clickedFs, true);
    assertEquals(2, CasUtil.selectCovered(mergeCAs.getCas(), type, 0, 0).size());
}

Example 17 with User

use of de.tudarmstadt.ukp.clarin.webanno.security.model.User in project webanno by webanno.

the class SuggestionViewPanel method mergeArc.

private void mergeArc(IRequestParameters aRequest, UserAnnotationSegment aCurationUserSegment, JCas aJcas) throws AnnotationException, IOException, UIMAException, ClassNotFoundException {
    int addressOriginClicked = aRequest.getParameterValue(PARAM_ORIGIN_SPAN_ID).toInt();
    int addressTargetClicked = aRequest.getParameterValue(PARAM_TARGET_SPAN_ID).toInt();
    String arcType = removePrefix(aRequest.getParameterValue(PARAM_TYPE).toString());
    String fsArcaddress = aRequest.getParameterValue(PARAM_ARC_ID).toString();
    AnnotatorState bModel = aCurationUserSegment.getAnnotatorState();
    SourceDocument sourceDocument = bModel.getDocument();
    // for correction and automation, the lower panel is the clickedJcase, from the suggestions
    JCas clickedJCas;
    if (!aCurationUserSegment.getAnnotatorState().getMode().equals(Mode.CURATION)) {
        clickedJCas = correctionDocumentService.readCorrectionCas(sourceDocument);
    } else {
        User user = userRepository.get(aCurationUserSegment.getUsername());
        AnnotationDocument clickedAnnotationDocument = documentService.getAnnotationDocument(sourceDocument, user);
        clickedJCas = getJCas(bModel, clickedAnnotationDocument);
    }
    long layerId = TypeUtil.getLayerId(arcType);
    AnnotationLayer layer = annotationService.getLayer(layerId);
    TypeAdapter adapter = annotationService.getAdapter(layer);
    int address = Integer.parseInt(fsArcaddress.split("\\.")[0]);
    AnnotationFS clickedFS = selectByAddr(clickedJCas, address);
    if (isCorefType(clickedFS)) {
        throw new AnnotationException(" Coreference Annotation not supported in curation");
    }
    MergeCas.addArcAnnotation(adapter, aJcas, addressOriginClicked, addressTargetClicked, fsArcaddress, clickedJCas, clickedFS);
    writeEditorCas(bModel, aJcas);
    int sentenceNumber = getSentenceNumber(clickedJCas, clickedFS.getBegin());
    bModel.setFocusUnitIndex(sentenceNumber);
    // Update timestamp
    bModel.getDocument().setSentenceAccessed(sentenceNumber);
    if (bModel.getPreferences().isScrollPage()) {
        Sentence sentence = selectSentenceAt(aJcas, bModel.getFirstVisibleUnitBegin(), bModel.getFirstVisibleUnitEnd());
        sentence = findWindowStartCenteringOnSelection(aJcas, sentence, clickedFS.getBegin(), bModel.getProject(), bModel.getDocument(), bModel.getPreferences().getWindowSize());
        bModel.setFirstVisibleUnit(sentence);
    }
}

Example 18 with User

use of de.tudarmstadt.ukp.clarin.webanno.security.model.User in project webanno by webanno.

the class SuggestionViewPanel method mergeSpan.

private void mergeSpan(IRequestParameters aRequest, UserAnnotationSegment aCurationUserSegment, JCas aJcas) throws AnnotationException, UIMAException, ClassNotFoundException, IOException {
    User user = userRepository.get(aCurationUserSegment.getUsername());
    SourceDocument sourceDocument = aCurationUserSegment.getAnnotatorState().getDocument();
    AnnotationDocument clickedAnnotationDocument = documentService.getAnnotationDocument(sourceDocument, user);
    Integer address = aRequest.getParameterValue(PARAM_ID).toInteger();
    String spanType = removePrefix(aRequest.getParameterValue(PARAM_TYPE).toString());
    createSpan(spanType, aCurationUserSegment.getAnnotatorState(), aJcas, clickedAnnotationDocument, address);
}

Example 19 with User

use of de.tudarmstadt.ukp.clarin.webanno.security.model.User in project webanno by webanno.

the class SuggestionBuilder method createCorrectionCas.

private JCas createCorrectionCas(JCas mergeJCas, AnnotatorState aBratAnnotatorModel, AnnotationDocument randomAnnotationDocument) throws UIMAException, ClassNotFoundException, IOException {
    User userLoggedIn = userRepository.get(SecurityContextHolder.getContext().getAuthentication().getName());
    mergeJCas = documentService.readAnnotationCas(aBratAnnotatorModel.getDocument(), userLoggedIn);
    correctionDocumentService.writeCorrectionCas(mergeJCas, randomAnnotationDocument.getDocument());
    return mergeJCas;
}

Example 20 with User

use of de.tudarmstadt.ukp.clarin.webanno.security.model.User in project webanno by webanno.

the class SuggestionBuilder method listJcasesforCorrection.

private Map<String, JCas> listJcasesforCorrection(AnnotationDocument randomAnnotationDocument, SourceDocument aDocument, Mode aMode) throws UIMAException, ClassNotFoundException, IOException {
    Map<String, JCas> jCases = new HashMap<>();
    User user = userRepository.get(SecurityContextHolder.getContext().getAuthentication().getName());
    randomAnnotationDocument = documentService.getAnnotationDocument(aDocument, user);
    // Upgrading should be an explicit action during the opening of a document at the end
    // of the open dialog - it must not happen during editing because the CAS addresses
    // are used as IDs in the UI
    // repository.upgradeCasAndSave(aDocument, aMode, user.getUsername());
    JCas jCas = documentService.readAnnotationCas(randomAnnotationDocument);
    jCases.put(user.getUsername(), jCas);
    return jCases;
}