Examples with JFormattedTextField javax.swing.JFormattedTextField used on opensource projects

Example 16 with JFormattedTextField

use of javax.swing.JFormattedTextField in project EnrichmentMapApp by BaderLab.

the class CutoffPropertiesPanel method getFormatterFactory.

private static AbstractFormatterFactory getFormatterFactory(boolean scientific) {
    return new AbstractFormatterFactory() {

        @Override
        public AbstractFormatter getFormatter(JFormattedTextField tf) {
            NumberFormat format = scientific ? new DecimalFormat("0.######E00") : new DecimalFormat();
            format.setMinimumFractionDigits(scientific ? 0 : 1);
            format.setMaximumFractionDigits(12);
            InternationalFormatter formatter = new InternationalFormatter(format);
            formatter.setAllowsInvalid(true);
            return formatter;
        }
    };
}

Example 17 with JFormattedTextField

use of javax.swing.JFormattedTextField in project EnrichmentMapApp by BaderLab.

the class PostAnalysisKnownSignaturePanel method createKnownSignatureGMTPanel.

/**
	 * @return Panel for choosing and loading GMT and SignatureGMT Geneset-Files
	 */
private JPanel createKnownSignatureGMTPanel() {
    knownSignatureGMTFileNameTextField = new JFormattedTextField();
    knownSignatureGMTFileNameTextField.setColumns(15);
    knownSignatureGMTFileNameTextField.setToolTipText(Messages.GMT_INSTRUCTION);
    final Color textFieldForeground = knownSignatureGMTFileNameTextField.getForeground();
    knownSignatureGMTFileNameTextField.addPropertyChangeListener("value", new PropertyChangeListener() {

        @Override
        public void propertyChange(PropertyChangeEvent e) {
            // if the text is red set it back to black as soon as the user starts typing
            knownSignatureGMTFileNameTextField.setForeground(textFieldForeground);
        }
    });
    JButton selectSigGMTFileButton = new JButton("Browse...");
    selectSigGMTFileButton.setToolTipText(Messages.GMT_INSTRUCTION);
    selectSigGMTFileButton.setActionCommand("Known Signature");
    selectSigGMTFileButton.addActionListener(e -> {
        parentPanel.chooseGMTFile(knownSignatureGMTFileNameTextField);
    });
    makeSmall(knownSignatureGMTFileNameTextField, selectSigGMTFileButton);
    JPanel panel = new JPanel();
    panel.setBorder(LookAndFeelUtil.createTitledBorder("SigGMT File (contains signature-genesets)"));
    final GroupLayout layout = new GroupLayout(panel);
    panel.setLayout(layout);
    layout.setAutoCreateContainerGaps(true);
    layout.setAutoCreateGaps(!LookAndFeelUtil.isAquaLAF());
    layout.setHorizontalGroup(layout.createSequentialGroup().addComponent(knownSignatureGMTFileNameTextField, DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE).addComponent(selectSigGMTFileButton, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE));
    layout.setVerticalGroup(layout.createParallelGroup(Alignment.CENTER, false).addComponent(knownSignatureGMTFileNameTextField, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(selectSigGMTFileButton));
    if (LookAndFeelUtil.isAquaLAF())
        panel.setOpaque(false);
    return panel;
}

Example 18 with JFormattedTextField

use of javax.swing.JFormattedTextField in project EnrichmentMapApp by BaderLab.

the class PostAnalysisSignatureDiscoveryPanel method createSignatureDiscoveryGMTPanel.

/**
     * @return Panel for choosing and loading GMT and SignatureGMT Geneset-Files 
     */
private JPanel createSignatureDiscoveryGMTPanel() {
    signatureDiscoveryGMTFileNameTextField = new JFormattedTextField();
    signatureDiscoveryGMTFileNameTextField.setColumns(15);
    signatureDiscoveryGMTFileNameTextField.setToolTipText(Messages.GMT_INSTRUCTION);
    final Color textFieldForeground = signatureDiscoveryGMTFileNameTextField.getForeground();
    signatureDiscoveryGMTFileNameTextField.addPropertyChangeListener("value", (PropertyChangeEvent e) -> {
        // if the text is red set it back to black as soon as the user starts typing
        signatureDiscoveryGMTFileNameTextField.setForeground(textFieldForeground);
    });
    JButton selectSigGMTFileButton = new JButton("Browse...");
    selectSigGMTFileButton.setToolTipText(Messages.GMT_INSTRUCTION);
    selectSigGMTFileButton.setActionCommand("Signature Discovery");
    selectSigGMTFileButton.addActionListener((ActionEvent evt) -> {
        parentPanel.chooseGMTFile(signatureDiscoveryGMTFileNameTextField);
    });
    JLabel filterLabel = new JLabel("Filter:");
    filterTextField = new JFormattedTextField();
    filterTextField.setColumns(4);
    filterTextField.setHorizontalAlignment(JTextField.RIGHT);
    filterTextField.addPropertyChangeListener("value", (PropertyChangeEvent e) -> {
        StringBuilder message = new StringBuilder("The value you have entered is invalid.\n");
        Number number = (Number) filterTextField.getValue();
        PostAnalysisFilterType filterType = getFilterType();
        Optional<Double> value = PostAnalysisInputPanel.validateAndGetFilterValue(number, filterType, message);
        savedFilterValues.put(filterType, value.orElse(filterType.defaultValue));
        if (!value.isPresent()) {
            filterTextField.setValue(filterType.defaultValue);
            JOptionPane.showMessageDialog(application.getJFrame(), message.toString(), "Parameter out of bounds", JOptionPane.WARNING_MESSAGE);
        }
    });
    // Types of filters:
    // 1. filter by percent, i.e. the overlap between the signature geneset and EM geneset
    //    has to be X percentage of the EM set it overlaps with for at least one geneset in the enrichment map.
    // 2. filter by number, i.e. the overlap between the signature geneset and EM geneset
    //    has to be X genes of the EM set it overlaps with for at least one geneset in the enrichment map.
    // 3. filter by specificity, i.e looking for the signature genesets that are more specific than other genesets
    //    for instance a drug A that targets only X and Y as opposed to drug B that targets X,y,L,M,N,O,P.
    filterTypeCombo = new JComboBox<>();
    // default
    filterTypeCombo.addItem(PostAnalysisFilterType.NO_FILTER);
    //		filterTypeCombo.addItem(PostAnalysisFilterType.MANN_WHIT_TWO_SIDED);
    //		filterTypeCombo.addItem(PostAnalysisFilterType.MANN_WHIT_GREATER);
    //		filterTypeCombo.addItem(PostAnalysisFilterType.MANN_WHIT_LESS);
    filterTypeCombo.addItem(PostAnalysisFilterType.HYPERGEOM);
    filterTypeCombo.addItem(PostAnalysisFilterType.NUMBER);
    filterTypeCombo.addItem(PostAnalysisFilterType.PERCENT);
    filterTypeCombo.addItem(PostAnalysisFilterType.SPECIFIC);
    filterTypeCombo.addActionListener(e -> {
        updateFilterTextField();
    });
    updateFilterTextField();
    //TODO: Maybe move loading SigGMT to File-selection Event add load button
    JButton loadButton = new JButton();
    loadButton.setText("Load Gene Sets");
    loadButton.addActionListener(e -> {
        String filePath = (String) signatureDiscoveryGMTFileNameTextField.getValue();
        if (filePath == null || PostAnalysisInputPanel.checkFile(filePath).equals(Color.RED)) {
            String message = "Signature GMT file name not valid.\n";
            signatureDiscoveryGMTFileNameTextField.setForeground(Color.RED);
            JOptionPane.showMessageDialog(application.getJFrame(), message, "Post Analysis Known Signature", JOptionPane.WARNING_MESSAGE);
            return;
        }
        if (!EnrichmentMapParameters.checkFile(filePath)) {
            String message = "Signature GMT does not exist.\n";
            signatureDiscoveryGMTFileNameTextField.setForeground(Color.RED);
            JOptionPane.showMessageDialog(application.getJFrame(), message, "Post Analysis Known Signature", JOptionPane.WARNING_MESSAGE);
            return;
        }
        FilterMetric filterMetric = createFilterMetric();
        LoadSignatureSetsActionListener action = loadSignatureSetsActionListenerFactory.create(new File(filePath), filterMetric, parentPanel.getEnrichmentMap());
        action.setGeneSetCallback(gs -> {
            this.signatureGenesets = gs;
        });
        action.setFilteredSignatureSetsCallback(selected -> {
            availSigSetsModel.clear();
            selectedSigSetsModel.clear();
            for (String name : selected) availSigSetsModel.addElement(name);
            update();
        });
        action.actionPerformed(null);
    });
    makeSmall(signatureDiscoveryGMTFileNameTextField, selectSigGMTFileButton);
    makeSmall(filterLabel, filterTypeCombo, filterTextField);
    makeSmall(loadButton);
    JPanel panel = new JPanel();
    panel.setBorder(LookAndFeelUtil.createTitledBorder("SigGMT File (contains signature-genesets)"));
    final GroupLayout layout = new GroupLayout(panel);
    panel.setLayout(layout);
    layout.setAutoCreateContainerGaps(true);
    layout.setAutoCreateGaps(!LookAndFeelUtil.isAquaLAF());
    layout.setHorizontalGroup(layout.createParallelGroup(Alignment.CENTER, true).addGroup(layout.createSequentialGroup().addComponent(signatureDiscoveryGMTFileNameTextField, DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE).addComponent(selectSigGMTFileButton, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE)).addGroup(layout.createSequentialGroup().addComponent(filterLabel, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(filterTypeCombo, DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE).addComponent(filterTextField, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE)).addComponent(loadButton, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE));
    layout.setVerticalGroup(layout.createSequentialGroup().addGroup(layout.createParallelGroup(Alignment.CENTER, false).addComponent(signatureDiscoveryGMTFileNameTextField, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(selectSigGMTFileButton)).addGroup(layout.createParallelGroup(Alignment.CENTER, false).addComponent(filterLabel, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(filterTypeCombo, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(filterTextField, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE)).addComponent(loadButton, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE));
    if (LookAndFeelUtil.isAquaLAF())
        panel.setOpaque(false);
    return panel;
}

Example 19 with JFormattedTextField

use of javax.swing.JFormattedTextField in project EnrichmentMapApp by BaderLab.

the class PostAnalysisWeightPanel method createHypergeomPanel.

private JPanel createHypergeomPanel() {
    ActionListener universeSelectActionListener = e -> {
        boolean enable = e.getActionCommand().equals("User Defined");
        universeSelectionTextField.setEnabled(enable);
    };
    gmtRadioButton = new JRadioButton();
    gmtRadioButton.setActionCommand("GMT");
    gmtRadioButton.addActionListener(universeSelectActionListener);
    gmtRadioButton.setSelected(true);
    expressionSetRadioButton = new JRadioButton();
    expressionSetRadioButton.setActionCommand("Expression Set");
    expressionSetRadioButton.addActionListener(universeSelectActionListener);
    intersectionRadioButton = new JRadioButton();
    intersectionRadioButton.setActionCommand("Intersection");
    intersectionRadioButton.addActionListener(universeSelectActionListener);
    userDefinedRadioButton = new JRadioButton("User Defined:");
    userDefinedRadioButton.setActionCommand("User Defined");
    userDefinedRadioButton.addActionListener(universeSelectActionListener);
    ButtonGroup buttonGroup = new ButtonGroup();
    buttonGroup.add(gmtRadioButton);
    buttonGroup.add(expressionSetRadioButton);
    buttonGroup.add(intersectionRadioButton);
    buttonGroup.add(userDefinedRadioButton);
    DecimalFormat intFormat = new DecimalFormat();
    intFormat.setParseIntegerOnly(true);
    universeSelectionTextField = new JFormattedTextField(intFormat);
    universeSelectionTextField.addPropertyChangeListener("value", e -> {
        Number val = (Number) universeSelectionTextField.getValue();
        if (val == null || val.intValue() < 0) {
            universeSelectionTextField.setValue(1);
            CySwingApplication application = serviceRegistrar.getService(CySwingApplication.class);
            JOptionPane.showMessageDialog(application.getJFrame(), "Universe value must be greater than zero", "Parameter out of bounds", JOptionPane.WARNING_MESSAGE);
        }
    });
    universeSelectionTextField.setEnabled(false);
    gmtRadioButton.setText("GMT");
    expressionSetRadioButton.setText("Expression Set");
    intersectionRadioButton.setText("Intersection");
    universeSelectionTextField.setValue(0);
    makeSmall(gmtRadioButton, expressionSetRadioButton, intersectionRadioButton, userDefinedRadioButton, universeSelectionTextField);
    JPanel panel = new JPanel();
    panel.setBorder(LookAndFeelUtil.createTitledBorder("Advanced Hypergeometric Universe"));
    final GroupLayout layout = new GroupLayout(panel);
    panel.setLayout(layout);
    layout.setAutoCreateContainerGaps(true);
    layout.setAutoCreateGaps(!LookAndFeelUtil.isAquaLAF());
    layout.setHorizontalGroup(layout.createParallelGroup(Alignment.LEADING, true).addComponent(gmtRadioButton).addComponent(expressionSetRadioButton).addComponent(intersectionRadioButton).addGroup(layout.createSequentialGroup().addComponent(userDefinedRadioButton, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addPreferredGap(ComponentPlacement.RELATED).addComponent(universeSelectionTextField, DEFAULT_SIZE, DEFAULT_SIZE, Short.MAX_VALUE)));
    layout.setVerticalGroup(layout.createSequentialGroup().addComponent(gmtRadioButton, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(expressionSetRadioButton, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(intersectionRadioButton, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addGroup(layout.createParallelGroup(Alignment.CENTER, false).addComponent(userDefinedRadioButton, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE).addComponent(universeSelectionTextField, PREFERRED_SIZE, DEFAULT_SIZE, PREFERRED_SIZE)));
    if (LookAndFeelUtil.isAquaLAF())
        panel.setOpaque(false);
    return panel;
}

Example 20 with JFormattedTextField

use of javax.swing.JFormattedTextField in project EnrichmentMapApp by BaderLab.

the class SliderBarPanel method getTextField.

public JFormattedTextField getTextField() {
    if (textField == null) {
        textField = new JFormattedTextField(format) {

            @Override
            public Dimension getPreferredSize() {
                final Dimension d = super.getPreferredSize();
                if (this.getGraphics() != null) {
                    // Set the preferred text field size after it gets a Graphics
                    int sw = 16 + this.getGraphics().getFontMetrics().stringWidth(format.format(max));
                    d.width = Math.max(sw, 48);
                }
                return d;
            }
        };
        textField.setHorizontalAlignment(JTextField.RIGHT);
        textField.addActionListener(evt -> {
            textFieldValueChanged();
        });
        textField.addFocusListener(new FocusAdapter() {

            @Override
            public void focusLost(FocusEvent e) {
                textFieldValueChanged();
            }
        });
    }
    return textField;
}