Examples with Logger org.apache.logging.log4j.Logger used on opensource projects

Example 66 with Logger

use of org.apache.logging.log4j.Logger in project logging-log4j2 by apache.

the class AbstractScriptFilterTest method testGroovyFilter.

@Test
public void testGroovyFilter() throws Exception {
    final Logger logger = LogManager.getLogger("TestGroovyFilter");
    logger.traceEntry();
    logger.info("This should not be logged");
    ThreadContext.put("UserId", "JohnDoe");
    logger.info("This should be logged");
    ThreadContext.clearMap();
    final ListAppender app = getContext().getListAppender("List");
    try {
        final List<String> messages = app.getMessages();
        assertNotNull("No Messages", messages);
        assertTrue("Incorrect number of messages. Expected 2, Actual " + messages.size(), messages.size() == 2);
    } finally {
        app.clear();
    }
}

Example 67 with Logger

use of org.apache.logging.log4j.Logger in project logging-log4j2 by apache.

the class AbstractScriptFilterTest method testJavascriptFilter.

@Test
public void testJavascriptFilter() throws Exception {
    final Logger logger = LogManager.getLogger("TestJavaScriptFilter");
    logger.traceEntry();
    logger.info("This should not be logged");
    ThreadContext.put("UserId", "JohnDoe");
    logger.info("This should be logged");
    ThreadContext.clearMap();
    final ListAppender app = getContext().getListAppender("List");
    final List<String> messages = app.getMessages();
    try {
        assertNotNull("No Messages", messages);
        assertTrue("Incorrect number of messages. Expected 2, Actual " + messages.size(), messages.size() == 2);
    } finally {
        app.clear();
    }
}

Example 68 with Logger

use of org.apache.logging.log4j.Logger in project logging-log4j2 by apache.

the class XmlLoggerPropsTest method testWithProps.

@Test
public void testWithProps() {
    final ListAppender listAppender = context.getListAppender("List");
    assertNotNull("No List Appender", listAppender);
    try {
        assertThat(context.getConfiguration(), is(instanceOf(XmlConfiguration.class)));
        Logger logger = LogManager.getLogger(XmlLoggerPropsTest.class);
        logger.debug("Test with props");
        logger = LogManager.getLogger("tiny.bubbles");
        logger.debug("Test on root");
        final List<String> events = listAppender.getMessages();
        assertTrue("No events", events.size() > 0);
        assertTrue("Incorrect number of events", events.size() == 2);
        assertThat(events.get(0), allOf(containsString("user="), containsString("phrasex=****"), containsString("test=test"), containsString("test2=test2default"), containsString("test3=Unknown"), containsString("test4=test"), containsString("test5=test"), containsString("attribKey=attribValue"), containsString("duplicateKey=nodeValue")));
        assertThat(events.get(1), allOf(containsString("user="), containsString("phrasex=****"), containsString("test=test"), containsString("test2=test2default"), containsString("test3=Unknown"), containsString("test4=test"), containsString("test5=test"), containsString("attribKey=attribValue"), containsString("duplicateKey=nodeValue")));
    } finally {
        System.clearProperty("test");
    }
}

Example 69 with Logger

use of org.apache.logging.log4j.Logger in project logging-log4j2 by apache.

the class MongoDbTest method test.

@Test
public void test() {
    final Logger logger = LogManager.getLogger();
    logger.info("Hello log");
}

Example 70 with Logger

use of org.apache.logging.log4j.Logger in project gatk by broadinstitute.

the class HDF5PCACoveragePoNCreationUtils method subsetReadCountsToUsableTargets.

/**
     * Subsets targets in the input count to the usable ones based on the percentile threshold indicated
     * by the user.
     *
     * <p>
     *     It returns a pair of object, where the left one is the updated read-counts with only the usable
     *     targets, and the right one is the corresponding target factors.
     * </p>
     *
     * @param readCounts the input read-counts.
     * @param targetFactorPercentileThreshold the minimum median count percentile under which targets are not considered useful.
     * @return never {@code null}.
     */
@VisibleForTesting
static Pair<ReadCountCollection, double[]> subsetReadCountsToUsableTargets(final ReadCountCollection readCounts, final double targetFactorPercentileThreshold, final Logger logger) {
    final double[] targetFactors = calculateTargetFactors(readCounts);
    final double threshold = new Percentile(targetFactorPercentileThreshold).evaluate(targetFactors);
    final List<Target> targetByIndex = readCounts.targets();
    final Set<Target> result = IntStream.range(0, targetFactors.length).filter(i -> targetFactors[i] >= threshold).mapToObj(targetByIndex::get).collect(Collectors.toCollection(LinkedHashSet::new));
    if (result.size() == targetByIndex.size()) {
        logger.info(String.format("All %d targets are kept", targetByIndex.size()));
        return new ImmutablePair<>(readCounts, targetFactors);
    } else {
        final int discardedCount = targetFactors.length - result.size();
        logger.info(String.format("Discarded %d target(s) out of %d with factors below %.2g (%.2f percentile)", discardedCount, targetFactors.length, threshold, targetFactorPercentileThreshold));
        final double[] targetFactorSubset = DoubleStream.of(targetFactors).filter(i -> i >= threshold).toArray();
        return new ImmutablePair<>(readCounts.subsetTargets(result), targetFactorSubset);
    }
}