Examples with Entity org.molgenis.data.Entity used on opensource projects

Example 96 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class MultiAllelicResultFilterTest method filterResultsTest6.

@Test
public void filterResultsTest6() {
    MultiAllelicResultFilter filter = new MultiAllelicResultFilter(Collections.singletonList(attributeFactory.create().setName("annotation").setDataType(STRING)), vcfAttributes);
    Optional<Entity> result6 = filter.filterResults(Collections.singletonList(resultEntity2), entity2, false);
    assertEquals(Lists.newArrayList(result6.asSet()).get(0).getString("annotation"), ".,2");
}

Example 97 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class MultiAllelicResultFilterTest method filterResultsTest5.

@Test
public void filterResultsTest5() {
    MultiAllelicResultFilter filter = new MultiAllelicResultFilter(Collections.singletonList(attributeFactory.create().setName("annotation").setDataType(STRING)), vcfAttributes);
    Optional<Entity> result5 = filter.filterResults(Collections.singletonList(resultEntity5), entity3, false);
    assertEquals(Lists.newArrayList(result5.asSet()).get(0).getString("annotation"), "8,9,7");
}

Example 98 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class MultiAllelicResultFilterTest method filterResultsTest11.

@Test
public void filterResultsTest11() {
    MultiAllelicResultFilter filter = new MultiAllelicResultFilter(Collections.singletonList(attributeFactory.create().setName("annotation").setDataType(STRING)), vcfAttributes);
    Optional<Entity> result = filter.filterResults(Collections.singletonList(resultEntity9), entity9, false);
    assertEquals(Lists.newArrayList(result.asSet()).get(0).getString("annotation"), "16");
}

Example 99 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class MultiAllelicResultFilterTest method filterResultsTest1.

@Test
public void filterResultsTest1() {
    MultiAllelicResultFilter filter = new MultiAllelicResultFilter(Collections.singletonList(attributeFactory.create().setName("annotation").setDataType(STRING)), vcfAttributes);
    Optional<Entity> result1 = filter.filterResults(Collections.singletonList(resultEntity1), entity1, false);
    assertEquals(Lists.newArrayList(result1.asSet()).get(0).getString("annotation"), "1");
}

Example 100 with Entity

use of org.molgenis.data.Entity in project molgenis by molgenis.

the class MultiAllelicResultFilterTest method filterResultsTest7.

@Test
public void filterResultsTest7() {
    MultiAllelicResultFilter filter = new MultiAllelicResultFilter(Collections.singletonList(attributeFactory.create().setName("annotation").setDataType(STRING)), vcfAttributes);
    Optional<Entity> result7 = filter.filterResults(Collections.singletonList(resultEntity6), entity3, false);
    assertEquals(Lists.newArrayList(result7.asSet()).get(0).getString("annotation"), "11,.,10");
}