Examples with IntervalBed au.edu.wehi.idsv.bed.IntervalBed used on opensource projects

Example 6 with IntervalBed

use of au.edu.wehi.idsv.bed.IntervalBed in project gridss by PapenfussLab.

the class GenomicProcessingContext method setBlacklist.

public void setBlacklist(File blacklistFile) throws IOException {
    this.blacklistFile = blacklistFile;
    this.blacklist = new IntervalBed(getDictionary(), getLinear(), blacklistFile);
}