Examples with Join ca.corefacility.bioinformatics.irida.model.joins.Join used on opensource projects

Example 11 with Join

use of ca.corefacility.bioinformatics.irida.model.joins.Join in project irida by phac-nml.

the class ProjectServiceImplIT method testMoveLockedSamplesWithOwnerFail.

@Test(expected = AccessDeniedException.class)
@WithMockUser(username = "user1", roles = "USER")
public void testMoveLockedSamplesWithOwnerFail() {
    Project source = projectService.read(2L);
    Project destination = projectService.read(10L);
    List<Join<Project, Sample>> samplesForProject = sampleService.getSamplesForProject(source);
    Set<Sample> samples = samplesForProject.stream().map(j -> j.getObject()).collect(Collectors.toSet());
    projectService.moveSamples(source, destination, samples, true);
}

Example 12 with Join

use of ca.corefacility.bioinformatics.irida.model.joins.Join in project irida by phac-nml.

the class ProjectServiceImplIT method testShareSamplesWithoutOwner.

@Test
@WithMockUser(username = "user1", roles = "USER")
public void testShareSamplesWithoutOwner() {
    Project source = projectService.read(2L);
    Project destination = projectService.read(10L);
    List<Join<Project, Sample>> samplesForProject = sampleService.getSamplesForProject(source);
    Set<Sample> samples = samplesForProject.stream().map(j -> j.getObject()).collect(Collectors.toSet());
    List<ProjectSampleJoin> copiedSamples = projectService.shareSamples(source, destination, samples, false);
    assertEquals(samples.size(), copiedSamples.size());
    copiedSamples.forEach(j -> {
        assertFalse("Project shouldn't be owner for sample", j.isOwner());
    });
    assertEquals("Samples should still exist in source project", Sets.newHashSet(1L, 2L), projectSampleJoinRepository.getSamplesForProject(source).stream().map(j -> j.getObject().getId()).collect(Collectors.toSet()));
    assertEquals("Samples should exist in destination project", Sets.newHashSet(1L, 2L), projectSampleJoinRepository.getSamplesForProject(destination).stream().map(j -> j.getObject().getId()).collect(Collectors.toSet()));
}

Example 13 with Join

use of ca.corefacility.bioinformatics.irida.model.joins.Join in project irida by phac-nml.

the class ProjectServiceImplIT method testAddTwoUsersToProject.

@Test
@WithMockUser(username = "admin", roles = "ADMIN")
public void testAddTwoUsersToProject() {
    Project p = projectService.read(1L);
    User u1 = userService.read(1L);
    User u2 = userService.read(2L);
    projectService.addUserToProject(p, u1, ProjectRole.PROJECT_OWNER);
    projectService.addUserToProject(p, u2, ProjectRole.PROJECT_OWNER);
    Collection<Join<Project, User>> usersOnProject = userService.getUsersForProject(p);
    assertEquals("Wrong number of users on project.", 2, usersOnProject.size());
    Set<User> users = Sets.newHashSet(u1, u2);
    for (Join<Project, User> user : usersOnProject) {
        assertTrue("No such user on project.", users.remove(user.getObject()));
    }
    assertEquals("Too many users on project", 0, users.size());
}

Example 14 with Join

use of ca.corefacility.bioinformatics.irida.model.joins.Join in project irida by phac-nml.

the class ProjectServiceImplIT method testMoveSamplesWithoutOwner.

@Test
@WithMockUser(username = "user1", roles = "USER")
public void testMoveSamplesWithoutOwner() {
    Project source = projectService.read(2L);
    Project destination = projectService.read(10L);
    List<Join<Project, Sample>> samplesForProject = sampleService.getSamplesForProject(source);
    Set<Sample> samples = samplesForProject.stream().map(j -> j.getObject()).collect(Collectors.toSet());
    List<ProjectSampleJoin> movedSamples = projectService.moveSamples(source, destination, samples, false);
    assertEquals(samples.size(), movedSamples.size());
    movedSamples.forEach(j -> {
        assertFalse("Project shouldn't be owner for sample", j.isOwner());
    });
    assertEquals("Samples should not exist in source project", Long.valueOf(0L), projectSampleJoinRepository.countSamplesForProject(source));
    assertEquals("Samples should exist in destination project", Sets.newHashSet(1L, 2L), projectSampleJoinRepository.getSamplesForProject(destination).stream().map(j -> j.getObject().getId()).collect(Collectors.toSet()));
}

Example 15 with Join

use of ca.corefacility.bioinformatics.irida.model.joins.Join in project irida by phac-nml.

the class ProjectServiceImplIT method testAddUserToProject.

@Test
@WithMockUser(username = "admin", roles = "ADMIN")
public void testAddUserToProject() {
    Project p = projectService.read(1L);
    User u = userService.read(1L);
    Join<Project, User> join = projectService.addUserToProject(p, u, ProjectRole.PROJECT_OWNER);
    assertNotNull("Join was not populated.", join);
    assertEquals("Join has wrong project.", p, join.getSubject());
    assertEquals("Join has wrong user.", u, join.getObject());
    List<Join<Project, User>> projects = projectService.getProjectsForUser(u);
    assertEquals("User is not part of project.", p, projects.iterator().next().getSubject());
}