Examples with SequencingRun ca.corefacility.bioinformatics.irida.model.run.SequencingRun used on opensource projects

Example 16 with SequencingRun

use of ca.corefacility.bioinformatics.irida.model.run.SequencingRun in project irida by phac-nml.

the class SequencingRunServiceImplIT method testDeleteMiseqRunAsTechFail.

@Test(expected = AccessDeniedException.class)
@WithMockUser(username = "tech", password = "password1", roles = "TECHNICIAN")
public void testDeleteMiseqRunAsTechFail() {
    // run 2 is not owned by "user"
    SequencingRun mr = miseqRunService.read(2L);
    miseqRunService.delete(mr.getId());
}

Example 17 with SequencingRun

use of ca.corefacility.bioinformatics.irida.model.run.SequencingRun in project irida by phac-nml.

the class SequencingRunServiceImplIT method testUpdateMiseqRunAsSequencer.

@Test
@WithMockUser(username = "sequencer", password = "password1", roles = "SEQUENCER")
public void testUpdateMiseqRunAsSequencer() {
    String newDescription = "a different description";
    SequencingRun mr = miseqRunService.read(1L);
    mr.setDescription(newDescription);
    SequencingRun update = miseqRunService.update(mr);
    assertEquals(update.getDescription(), newDescription);
}

Example 18 with SequencingRun

use of ca.corefacility.bioinformatics.irida.model.run.SequencingRun in project irida by phac-nml.

the class SequencingRunServiceImplIT method testUpdateMiseqRunAsTechFail.

@Test(expected = AccessDeniedException.class)
@WithMockUser(username = "tech", password = "password1", roles = "TECHNICIAN")
public void testUpdateMiseqRunAsTechFail() {
    // run 2 is not owned by "user"
    SequencingRun mr = miseqRunService.read(2L);
    mr.setDescription("different description");
    miseqRunService.update(mr);
}

Example 19 with SequencingRun

use of ca.corefacility.bioinformatics.irida.model.run.SequencingRun in project irida by phac-nml.

the class SequencingRunServiceImplIT method testReadMiseqRunAsSequencer.

@Test
@WithMockUser(username = "sequencer", password = "password1", roles = "SEQUENCER")
public void testReadMiseqRunAsSequencer() {
    SequencingRun mr = miseqRunService.read(1L);
    assertNotNull("Created run was not assigned an ID.", mr.getId());
}

Example 20 with SequencingRun

use of ca.corefacility.bioinformatics.irida.model.run.SequencingRun in project irida by phac-nml.

the class SequencingRunServiceImplIT method testUpdateMiseqRunAsUserSuccess.

@Test
@WithMockUser(username = "user", password = "password1", roles = "USER")
public void testUpdateMiseqRunAsUserSuccess() {
    // run 1 is owned by "user" so should be able to update
    SequencingRun mr = miseqRunService.read(1L);
    mr.setDescription("different description");
    miseqRunService.update(mr);
}