Examples with Sample ca.corefacility.bioinformatics.irida.model.sample.Sample used on opensource projects

Example 86 with Sample

use of ca.corefacility.bioinformatics.irida.model.sample.Sample in project irida by phac-nml.

the class SampleServiceImplIT method testGetAssembliesForSampleFail.

@Test(expected = AccessDeniedException.class)
@WithMockUser(username = "dr-evil", roles = "USER")
public void testGetAssembliesForSampleFail() {
    Sample s = sampleService.read(1L);
    sampleService.getAssembliesForSample(s);
}

Example 87 with Sample

use of ca.corefacility.bioinformatics.irida.model.sample.Sample in project irida by phac-nml.

the class SampleServiceImplIT method testReadSampleAsSequencer.

@Test
@WithMockUser(username = "fbristow", roles = "SEQUENCER")
public void testReadSampleAsSequencer() {
    Long sampleID = 1L;
    Sample s = sampleService.read(sampleID);
    assertNotNull("Sample was not populated.", s);
    assertEquals("Wrong external id.", sampleID, s.getId());
}

Example 88 with Sample

use of ca.corefacility.bioinformatics.irida.model.sample.Sample in project irida by phac-nml.

the class SampleServiceImplIT method testGetQCEntiresForSample.

@Test
@WithMockUser(username = "fbristow", roles = "ADMIN")
public void testGetQCEntiresForSample() {
    Sample s = sampleService.read(1L);
    List<QCEntry> qcEntriesForSample = sampleService.getQCEntriesForSample(s);
    assertEquals("should be 1 qc entry", 1L, qcEntriesForSample.size());
}

Example 89 with Sample

use of ca.corefacility.bioinformatics.irida.model.sample.Sample in project irida by phac-nml.

the class SampleServiceImplIT method testUpdateLatLong.

@Test
@WithMockUser(username = "fbristow", roles = "ADMIN")
public void testUpdateLatLong() {
    Sample s = sampleService.read(2L);
    String latitude = "50.00";
    String longitude = "-100.00";
    s.setLatitude(latitude);
    s.setLongitude(longitude);
    s = sampleService.update(s);
    assertEquals("Wrong latitude was stored.", latitude, s.getLatitude());
    assertEquals("Wrong longitude was stored.", longitude, s.getLongitude());
}

Example 90 with Sample

use of ca.corefacility.bioinformatics.irida.model.sample.Sample in project irida by phac-nml.

the class SampleServiceImplIT method testRemoveGenomeAssemblyFromSampleFail.

@Test(expected = AccessDeniedException.class)
@WithMockUser(username = "dr-evil", roles = "USER")
public void testRemoveGenomeAssemblyFromSampleFail() {
    Sample s = sampleService.read(1L);
    assertNotNull(sampleService.getGenomeAssemblyForSample(s, 1L));
    sampleService.removeGenomeAssemblyFromSample(s, 1L);
}