Examples with Analysis ca.corefacility.bioinformatics.irida.model.workflow.analysis.Analysis used on opensource projects

Example 41 with Analysis

use of ca.corefacility.bioinformatics.irida.model.workflow.analysis.Analysis in project irida by phac-nml.

the class AnalysisController method getSharedProjectsForAnalysis.

/**
 * Get the status of projects that can be shared with the given analysis
 *
 * @param submissionId
 *            the {@link AnalysisSubmission} id
 * @return a list of {@link AnalysisController.SharedProjectResponse}
 */
@RequestMapping(value = "/ajax/{submissionId}/share", method = RequestMethod.GET)
@ResponseBody
public List<SharedProjectResponse> getSharedProjectsForAnalysis(@PathVariable Long submissionId) {
    AnalysisSubmission submission = analysisSubmissionService.read(submissionId);
    // Input files
    // - Paired
    Set<SequenceFilePair> inputFilePairs = sequencingObjectService.getSequencingObjectsOfTypeForAnalysisSubmission(submission, SequenceFilePair.class);
    // get projects already shared with submission
    Set<Project> projectsShared = projectService.getProjectsForAnalysisSubmission(submission).stream().map(ProjectAnalysisSubmissionJoin::getSubject).collect(Collectors.toSet());
    // get available projects
    Set<Project> projectsInAnalysis = projectService.getProjectsForSequencingObjects(inputFilePairs);
    List<SharedProjectResponse> projectResponses = projectsShared.stream().map(p -> new SharedProjectResponse(p, true)).collect(Collectors.toList());
    // Create response for shared projects
    projectResponses.addAll(projectsInAnalysis.stream().filter(p -> !projectsShared.contains(p)).map(p -> new SharedProjectResponse(p, false)).collect(Collectors.toList()));
    projectResponses.sort(new Comparator<SharedProjectResponse>() {

        @Override
        public int compare(SharedProjectResponse p1, SharedProjectResponse p2) {
            return p1.getProject().getName().compareTo(p2.getProject().getName());
        }
    });
    return projectResponses;
}