Examples with DataTablesResponse ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse used on opensource projects

Example 16 with DataTablesResponse

use of ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse in project irida by phac-nml.

the class AnalysesListingService method getPagedSubmissions.

/**
 * Get a {@link DataTablesResponse} for {@link AnalysisSubmission}s based upon the {@link User}, and the {@link Project}
 *
 * @param params  {@link DataTablesParams}
 * @param locale  {@link Locale}
 * @param user    {@link User}
 * @param project {@link Project}
 * @return {@link DataTablesResponse}
 * @throws IridaWorkflowNotFoundException If the requested workflow doesn't exist
 * @throws ExecutionManagerException      If the submission cannot be read properly
 */
public DataTablesResponse getPagedSubmissions(DataTablesParams params, Locale locale, User user, Project project) throws IridaWorkflowNotFoundException, ExecutionManagerException {
    /*
		Check the DataTableParams to see if any search conditions are present
		 */
    Map<String, String> searchMap = params.getSearchMap();
    AnalysisState state = searchMap.containsKey("analysisState") ? AnalysisState.valueOf(searchMap.get("analysisState")) : null;
    String name = searchMap.getOrDefault("name", null);
    /*
		Workflow Ids are a special consideration.
		The actual ids need to be look up based on the name passed.
		 */
    Set<UUID> workflowIds = null;
    if (searchMap.containsKey("workflow")) {
        AnalysisType workflowType = AnalysisType.fromString(searchMap.get("workflow"));
        Set<IridaWorkflow> workflows = iridaWorkflowsService.getAllWorkflowsByType(workflowType);
        workflowIds = workflows.stream().map(IridaWorkflow::getWorkflowIdentifier).collect(Collectors.toSet());
    }
    Page<AnalysisSubmission> page;
    PageRequest pageRequest = new PageRequest(params.getCurrentPage(), params.getLength(), params.getSort());
    if (user != null) {
        // if user is set, get submissions for the user
        page = analysisSubmissionService.listSubmissionsForUser(params.getSearchValue(), name, state, user, workflowIds, pageRequest);
    } else if (project != null) {
        // if the project is set, get submissions for the project
        page = analysisSubmissionService.listSubmissionsForProject(params.getSearchValue(), name, state, workflowIds, project, pageRequest);
    } else {
        // if neither is set, get admin page
        page = analysisSubmissionService.listAllSubmissions(params.getSearchValue(), name, state, workflowIds, pageRequest);
    }
    /*
		IRIDA DataTables response expects and object that implements the DataTablesResponseModel interface.
		 */
    List<DataTablesResponseModel> data = new ArrayList<>();
    for (AnalysisSubmission submission : page.getContent()) {
        // Each AnalysisSubmission needs to be converted into a DTAnalysis.
        data.add(createDataTablesAnalysis(submission, locale));
    }
    return new DataTablesResponse(params, page, data);
}

Example 17 with DataTablesResponse

use of ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse in project irida by phac-nml.

the class ProjectMembersController method getProjectGroupMembers.

/**
 * Get a page of groups on the project for display in a DataTable.
 *
 * @param params
 *            the datatables criteria for filtering/sorting groups
 * @param projectId
 *            the id of the project we're looking at
 * @return a {@link DataTablesResponseModel} of groups on the project
 */
@RequestMapping(value = "/{projectId}/settings/ajax/groups")
@ResponseBody
public DataTablesResponse getProjectGroupMembers(@DataTablesRequest DataTablesParams params, @PathVariable final Long projectId) {
    final Project project = projectService.read(projectId);
    final Page<UserGroupProjectJoin> userGroupsForProject = userGroupService.getUserGroupsForProject(params.getSearchValue(), project, params.getCurrentPage(), params.getLength(), params.getSort());
    List<DataTablesResponseModel> responseModels = new ArrayList<>();
    for (UserGroupProjectJoin userGroupProjectJoin : userGroupsForProject) {
        responseModels.add(new DTProjectGroup(userGroupProjectJoin));
    }
    return new DataTablesResponse(params, userGroupsForProject, responseModels);
}

Example 18 with DataTablesResponse

use of ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse in project irida by phac-nml.

the class ProjectSamplesController method getProjectSamples.

/**
 * Generate the {@link Sample}s for the {@link Project} table based on the filter criteria.
 *
 * @param projectId   identifier for the current {@link Project}
 * @param params      for the current DataTable.
 * @param sampleNames List of {@link Sample} names to filter by.
 * @param associated  List of associated {@link Project} identifiers currently displayed in the table.
 * @param filter      for specific {@link Sample} attributes.
 * @param locale      for the current user.
 * @return {@link DTProjectSamples} that meet the requirements
 */
@RequestMapping(value = "/projects/{projectId}/ajax/samples", produces = MediaType.APPLICATION_JSON_VALUE, method = RequestMethod.POST)
@ResponseBody
public DataTablesResponse getProjectSamples(@PathVariable Long projectId, @DataTablesRequest DataTablesParams params, @RequestParam(required = false, name = "sampleNames[]", defaultValue = "") List<String> sampleNames, @RequestParam(required = false, name = "associated[]", defaultValue = "") List<Long> associated, UISampleFilter filter, Locale locale) {
    List<Project> projects = new ArrayList<>();
    // Check to see if any associated projects need to be added to the query.
    if (!associated.isEmpty()) {
        projects = (List<Project>) projectService.readMultiple(associated);
    }
    // This project is always in the query.
    projects.add(projectService.read(projectId));
    final Page<ProjectSampleJoin> page = sampleService.getFilteredSamplesForProjects(projects, sampleNames, filter.getName(), params.getSearchValue(), filter.getOrganism(), filter.getStartDate(), filter.getEndDate(), params.getCurrentPage(), params.getLength(), params.getSort());
    // Create DataTables representation of the page.
    List<DataTablesResponseModel> models = new ArrayList<>();
    for (ProjectSampleJoin psj : page.getContent()) {
        models.add(buildProjectSampleDataTablesModel(psj, locale));
    }
    return new DataTablesResponse(params, page, models);
}

Example 19 with DataTablesResponse

use of ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse in project irida by phac-nml.

the class AnnouncementsController method getUserAnnouncementInfoTable.

/**
 * Get user read status for current announcement
 * @param announcementID {@link Long} identifier for the {@link Announcement}
 * @param params {@link DataTablesParams} parameters for current DataTable
 * @return {@link DataTablesResponse} containing the list of users.
 */
@RequestMapping(value = "/{announcementID}/details/ajax/list", method = RequestMethod.GET)
@PreAuthorize("hasRole('ROLE_ADMIN')")
@ResponseBody
public DataTablesResponse getUserAnnouncementInfoTable(@PathVariable Long announcementID, @DataTablesRequest final DataTablesParams params) {
    final Announcement currentAnnouncement = announcementService.read(announcementID);
    final Page<User> page = userService.search(UserSpecification.searchUser(params.getSearchValue()), new PageRequest(params.getCurrentPage(), params.getLength(), params.getSort()));
    final List<DataTablesResponseModel> announcementUsers = page.getContent().stream().map(user -> new DTAnnouncementUser(user, userHasRead(user, currentAnnouncement))).collect(Collectors.toList());
    return new DataTablesResponse(params, page, announcementUsers);
}

Example 20 with DataTablesResponse

use of ca.corefacility.bioinformatics.irida.ria.web.components.datatables.DataTablesResponse in project irida by phac-nml.

the class GroupsController method getGroups.

/**
 * Search/filter/page with datatables for {@link UserGroup}.
 * @param params {@link DataTablesParams} for the current DataTable
 * @param principal Currently logged in user
 * @return {@link DataTablesResponse} for the current table base on the parameters.
 */
@RequestMapping("/ajax/list")
@ResponseBody
public DataTablesResponse getGroups(@DataTablesRequest final DataTablesParams params, final Principal principal) {
    Page<UserGroup> groups = userGroupService.search(UserGroupSpecification.searchUserGroup(params.getSearchValue()), new PageRequest(params.getCurrentPage(), params.getLength(), params.getSort()));
    User currentUser = userService.getUserByUsername(principal.getName());
    List<DataTablesResponseModel> groupsWithOwnership = groups.getContent().stream().map(ug -> new DTUserGroup(ug, isGroupOwner(currentUser, ug), currentUser.getSystemRole().equals(Role.ROLE_ADMIN))).collect(Collectors.toList());
    return new DataTablesResponse(params, groups, groupsWithOwnership);
}