Examples with Bundle ca.uhn.fhir.model.dstu2.resource.Bundle used on opensource projects

Example 21 with Bundle

use of ca.uhn.fhir.model.dstu2.resource.Bundle in project synthea by synthetichealth.

the class FhirDstu2 method condition.

/**
 * Map the Condition into a FHIR Condition resource, and add it to the given Bundle.
 *
 * @param rand
 *          Source of randomness to use when generating ids etc
 * @param personEntry
 *          The Entry for the Person
 * @param bundle
 *          The Bundle to add to
 * @param encounterEntry
 *          The current Encounter entry
 * @param condition
 *          The Condition
 * @return The added Entry
 */
private static Entry condition(RandomNumberGenerator rand, Entry personEntry, Bundle bundle, Entry encounterEntry, HealthRecord.Entry condition) {
    Condition conditionResource = new Condition();
    conditionResource.setPatient(new ResourceReferenceDt(personEntry.getFullUrl()));
    conditionResource.setEncounter(new ResourceReferenceDt(encounterEntry.getFullUrl()));
    Code code = condition.codes.get(0);
    conditionResource.setCode(mapCodeToCodeableConcept(code, SNOMED_URI));
    conditionResource.setCategory(ConditionCategoryCodesEnum.DIAGNOSIS);
    conditionResource.setVerificationStatus(ConditionVerificationStatusEnum.CONFIRMED);
    conditionResource.setClinicalStatus(ConditionClinicalStatusCodesEnum.ACTIVE);
    conditionResource.setOnset(convertFhirDateTime(condition.start, true));
    conditionResource.setDateRecorded(new DateDt(new Date(condition.start)));
    if (condition.stop != 0) {
        conditionResource.setAbatement(convertFhirDateTime(condition.stop, true));
        conditionResource.setClinicalStatus(ConditionClinicalStatusCodesEnum.RESOLVED);
    }
    Entry conditionEntry = newEntry(rand, bundle, conditionResource);
    condition.fullUrl = conditionEntry.getFullUrl();
    return conditionEntry;
}

Example 22 with Bundle

use of ca.uhn.fhir.model.dstu2.resource.Bundle in project synthea by synthetichealth.

the class FhirDstu2 method report.

/**
 * Map the given Report to a FHIR DiagnosticReport resource, and add it to the given Bundle.
 *
 * @param rand
 *          Source of randomness to use when generating ids etc
 * @param personEntry
 *          The Entry for the Person
 * @param bundle
 *          Bundle to add the Report to
 * @param encounterEntry
 *          Current Encounter entry
 * @param report
 *          The Report
 * @return The added Entry
 */
private static Entry report(RandomNumberGenerator rand, Entry personEntry, Bundle bundle, Entry encounterEntry, Report report) {
    DiagnosticReport reportResource = new DiagnosticReport();
    reportResource.setStatus(DiagnosticReportStatusEnum.FINAL);
    /*
     * Technically, the CodeableConcept system should be "http://hl7.org/fhir/v2/0074"
     * But the official Argonauts profiles incorrectly list the category pattern as
     * the ValueSet (which contains the above system) as
     * "http://hl7.org/fhir/ValueSet/diagnostic-service-sections", so we repeat the
     * error here.
     */
    CodeableConceptDt category = new CodeableConceptDt("http://hl7.org/fhir/ValueSet/diagnostic-service-sections", "LAB");
    reportResource.setCategory(category);
    reportResource.setCode(mapCodeToCodeableConcept(report.codes.get(0), LOINC_URI));
    reportResource.setSubject(new ResourceReferenceDt(personEntry.getFullUrl()));
    reportResource.setEncounter(new ResourceReferenceDt(encounterEntry.getFullUrl()));
    reportResource.setEffective(convertFhirDateTime(report.start, true));
    reportResource.setIssued(new InstantDt(new Date(report.start)));
    ca.uhn.fhir.model.dstu2.resource.Encounter encounter = (ca.uhn.fhir.model.dstu2.resource.Encounter) encounterEntry.getResource();
    reportResource.setPerformer(encounter.getServiceProvider());
    for (Observation observation : report.observations) {
        ResourceReferenceDt reference = new ResourceReferenceDt(observation.fullUrl);
        reference.setDisplay(observation.codes.get(0).display);
        List<ResourceReferenceDt> result = new ArrayList<ResourceReferenceDt>();
        result.add(reference);
        reportResource.setResult(result);
    }
    return newEntry(rand, bundle, reportResource);
}

Example 23 with Bundle

use of ca.uhn.fhir.model.dstu2.resource.Bundle in project synthea by synthetichealth.

the class FhirDstu2 method media.

/**
 * Map the given Media element to a FHIR Media resource, and add it to the given Bundle.
 *
 * @param rand           Source of randomness to use when generating ids etc
 * @param personEntry    The Entry for the Person
 * @param bundle         Bundle to add the Media to
 * @param encounterEntry Current Encounter entry
 * @param obs   The Observation to map to FHIR and add to the bundle
 * @return The added Entry
 */
private static Entry media(RandomNumberGenerator rand, Entry personEntry, Bundle bundle, Entry encounterEntry, Observation obs) {
    ca.uhn.fhir.model.dstu2.resource.Media mediaResource = new ca.uhn.fhir.model.dstu2.resource.Media();
    // Hard code as a photo
    mediaResource.setType(DigitalMediaTypeEnum.PHOTO);
    mediaResource.setSubject(new ResourceReferenceDt(personEntry.getFullUrl()));
    Attachment content = (Attachment) obs.value;
    ca.uhn.fhir.model.dstu2.composite.AttachmentDt contentResource = new ca.uhn.fhir.model.dstu2.composite.AttachmentDt();
    contentResource.setContentType(content.contentType);
    contentResource.setLanguage(content.language);
    if (content.data != null) {
        ca.uhn.fhir.model.primitive.Base64BinaryDt data = new ca.uhn.fhir.model.primitive.Base64BinaryDt();
        data.setValueAsString(content.data);
        contentResource.setData(data);
    }
    contentResource.setUrl(content.url);
    contentResource.setSize(content.size);
    contentResource.setTitle(content.title);
    if (content.hash != null) {
        ca.uhn.fhir.model.primitive.Base64BinaryDt hash = new ca.uhn.fhir.model.primitive.Base64BinaryDt();
        hash.setValueAsString(content.hash);
        contentResource.setHash(hash);
    }
    mediaResource.setWidth(content.width);
    mediaResource.setHeight(content.height);
    mediaResource.setContent(contentResource);
    return newEntry(rand, bundle, mediaResource);
}

Example 24 with Bundle

use of ca.uhn.fhir.model.dstu2.resource.Bundle in project synthea by synthetichealth.

the class FhirDstu2 method convertToFHIRJson.

/**
 * Convert the given Person into a JSON String, containing a FHIR Bundle of the Person and the
 * associated entries from their health record.
 *
 * @param person
 *          Person to generate the FHIR JSON for
 * @param stopTime
 *          Time the simulation ended
 * @return String containing a JSON representation of a FHIR Bundle containing the Person's health
 *         record
 */
public static String convertToFHIRJson(Person person, long stopTime) {
    Bundle bundle = convertToFHIR(person, stopTime);
    String bundleJson = FHIR_CTX.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle);
    return bundleJson;
}

Example 25 with Bundle

use of ca.uhn.fhir.model.dstu2.resource.Bundle in project synthea by synthetichealth.

the class FhirDstu2 method encounter.

/**
 * Map the given Encounter into a FHIR Encounter resource, and add it to the given Bundle.
 *
 * @param person
 *          Patient at the encounter.
 * @param personEntry
 *          Entry for the Person
 * @param bundle
 *          The Bundle to add to
 * @param encounter
 *          The current Encounter
 * @return The added Entry
 */
private static Entry encounter(Person person, Entry personEntry, Bundle bundle, Encounter encounter) {
    ca.uhn.fhir.model.dstu2.resource.Encounter encounterResource = new ca.uhn.fhir.model.dstu2.resource.Encounter();
    encounterResource.setPatient(new ResourceReferenceDt(personEntry.getFullUrl()));
    encounterResource.setStatus(EncounterStateEnum.FINISHED);
    if (encounter.codes.isEmpty()) {
        // wellness encounter
        encounterResource.addType().addCoding().setCode("185349003").setDisplay("Encounter for check up").setSystem(SNOMED_URI);
    } else {
        Code code = encounter.codes.get(0);
        encounterResource.addType(mapCodeToCodeableConcept(code, SNOMED_URI));
    }
    EncounterClassEnum encounterClass = EncounterClassEnum.forCode(encounter.type);
    if (encounterClass == null) {
        encounterClass = EncounterClassEnum.AMBULATORY;
    }
    encounterResource.setClassElement(encounterClass);
    encounterResource.setPeriod(new PeriodDt().setStart(new DateTimeDt(new Date(encounter.start))).setEnd(new DateTimeDt(new Date(encounter.stop))));
    if (encounter.reason != null) {
        encounterResource.addReason().addCoding().setCode(encounter.reason.code).setDisplay(encounter.reason.display).setSystem(SNOMED_URI);
    }
    Provider provider = encounter.provider;
    if (provider == null) {
        // no associated provider, patient goes to wellness provider
        provider = person.getProvider(EncounterType.WELLNESS, encounter.start);
    }
    if (TRANSACTION_BUNDLE) {
        encounterResource.setServiceProvider(new ResourceReferenceDt(ExportHelper.buildFhirSearchUrl("Organization", provider.getResourceID())));
    } else {
        String providerFullUrl = findProviderUrl(provider, bundle);
        if (providerFullUrl != null) {
            encounterResource.setServiceProvider(new ResourceReferenceDt(providerFullUrl));
        } else {
            Entry providerOrganization = provider(bundle, provider);
            encounterResource.setServiceProvider(new ResourceReferenceDt(providerOrganization.getFullUrl()));
        }
    }
    encounterResource.getServiceProvider().setDisplay(provider.name);
    if (encounter.clinician != null) {
        if (TRANSACTION_BUNDLE) {
            encounterResource.addParticipant().setIndividual(new ResourceReferenceDt(ExportHelper.buildFhirNpiSearchUrl(encounter.clinician)));
        } else {
            String practitionerFullUrl = findPractitioner(encounter.clinician, bundle);
            if (practitionerFullUrl != null) {
                encounterResource.addParticipant().setIndividual(new ResourceReferenceDt(practitionerFullUrl));
            } else {
                Entry practitioner = practitioner(bundle, encounter.clinician);
                encounterResource.addParticipant().setIndividual(new ResourceReferenceDt(practitioner.getFullUrl()));
            }
        }
        encounterResource.getParticipantFirstRep().getIndividual().setDisplay(encounter.clinician.getFullname());
    }
    if (encounter.discharge != null) {
        Hospitalization hospitalization = new Hospitalization();
        Code dischargeDisposition = new Code(DISCHARGE_URI, encounter.discharge.code, encounter.discharge.display);
        hospitalization.setDischargeDisposition(mapCodeToCodeableConcept(dischargeDisposition, DISCHARGE_URI));
        encounterResource.setHospitalization(hospitalization);
    }
    return newEntry(person, bundle, encounterResource);
}