Examples with Shape cbit.gui.graph.Shape used on opensource projects

Example 6 with Shape

use of cbit.gui.graph.Shape in project vcell by virtualcell.

the class PathwayGraphModel method relationshipChanged.

public void relationshipChanged(RelationshipEvent event) {
    Shape shape = getShapeFromModelObject(event.getRelationshipObject());
    refreshRelationshipInfo(shape);
    refreshAll();
}

Example 7 with Shape

use of cbit.gui.graph.Shape in project vcell by virtualcell.

the class ShapeGroupUtil method shapesCanBeMadeGroup.

/*
	 * Shapes can be made a group if they each are eligible and if for any two
	 * shapes the next non-eligible ancestor (e.g. compartment) is the same.
	 * This excludes nodes in different compartments
	 */
public static boolean shapesCanBeMadeGroup(Set<Shape> shapes) {
    boolean bCanBeMadeGroup = true;
    Set<Shape> eligibleAncestors = new HashSet<Shape>();
    Set<Shape> ineligibleAncestors = new HashSet<Shape>();
    for (Shape shape : shapes) {
        if (!willBeSkippedWhenGrouping(shape)) {
            if (!isEligibleAsGroupMember(shape)) {
                bCanBeMadeGroup = false;
                break;
            }
            Shape parent = shape.getParent();
            if (parent != null) {
                if (isEligibleAsGroupMember(parent)) {
                    eligibleAncestors.add(parent);
                } else {
                    ineligibleAncestors.add(parent);
                    if (ineligibleAncestors.size() > 1) {
                        bCanBeMadeGroup = false;
                        break;
                    }
                }
            }
        }
    }
    while (bCanBeMadeGroup && !eligibleAncestors.isEmpty()) {
        Set<Shape> eligibleAncestorsNew = new HashSet<Shape>();
        for (Shape ancestor : eligibleAncestors) {
            Shape parent = ancestor.getParent();
            if (isEligibleAsGroupMember(parent)) {
                eligibleAncestorsNew.add(parent);
            } else {
                ineligibleAncestors.add(parent);
                if (ineligibleAncestors.size() > 1) {
                    bCanBeMadeGroup = false;
                    break;
                }
            }
        }
        eligibleAncestors = eligibleAncestorsNew;
    }
    return bCanBeMadeGroup;
}

Example 8 with Shape

use of cbit.gui.graph.Shape in project vcell by virtualcell.

the class VCGroupManager method collapseExistingGroups.

public void collapseExistingGroups() {
    GraphModel graphModel = graphView.getGraphModel();
    List<Shape> selectedShapes = graphModel.getSelectedShapes();
    for (Shape selectedShape : selectedShapes) {
        Shape parentShape = selectedShape.getParent();
        if (parentShape != null) {
            ShapeGroupUtil.collapseGroup(parentShape);
        }
    }
    graphView.repaint();
}

Example 9 with Shape

use of cbit.gui.graph.Shape in project vcell by virtualcell.

the class ModelCartoon method refreshRelationshipInfo.

public final void refreshRelationshipInfo(RelationshipModel relationshipModel) {
    for (RelationshipObject relationship : relationshipModel.getRelationshipObjects()) {
        BioModelEntityObject bioModelEntity = relationship.getBioModelEntityObject();
        Shape shape = getShapeFromModelObject(bioModelEntity);
        if (shape instanceof SpeciesContextShape) {
            SpeciesContextShape scShape = (SpeciesContextShape) shape;
            scShape.setLinkText("L");
        } else if (shape instanceof SimpleReactionShape) {
            SimpleReactionShape srShape = (SimpleReactionShape) shape;
            srShape.setLinkText("L");
        } else if (shape instanceof ReactionRuleDiagramShape) {
            ReactionRuleDiagramShape srShape = (ReactionRuleDiagramShape) shape;
            srShape.setLinkText("L");
        }
    }
}

Example 10 with Shape

use of cbit.gui.graph.Shape in project vcell by virtualcell.

the class ModelCartoon method relationshipChanged.

public void relationshipChanged(RelationshipEvent event) {
    RelationshipObject relationshipObject = event.getRelationshipObject();
    if (event.getOperationType() == event.ADDED) {
        Shape shape = getShapeFromModelObject(relationshipObject.getBioModelEntityObject());
        if (shape instanceof SpeciesContextShape) {
            SpeciesContextShape scShape = (SpeciesContextShape) shape;
            scShape.setLinkText("L");
        } else if (shape instanceof SimpleReactionShape) {
            SimpleReactionShape srShape = (SimpleReactionShape) shape;
            srShape.setLinkText("L");
        } else if (shape instanceof ReactionRuleDiagramShape) {
            ReactionRuleDiagramShape srShape = (ReactionRuleDiagramShape) shape;
            srShape.setLinkText("L");
        }
    } else if (event.getOperationType() == event.REMOVED) {
        Shape shape = getShapeFromModelObject(relationshipObject.getBioModelEntityObject());
        if (shape instanceof SpeciesContextShape) {
            SpeciesContextShape scShape = (SpeciesContextShape) shape;
            scShape.setLinkText("");
            // if the BioModelEntity Object is still linked with other BioPax objects, we add the "L" shape back
            if (((RelationshipModel) event.getSource()).getRelationshipObjects(relationshipObject.getBioModelEntityObject()).size() > 0) {
                scShape.setLinkText("L");
            }
        } else if (shape instanceof SimpleReactionShape) {
            SimpleReactionShape srShape = (SimpleReactionShape) shape;
            srShape.setLinkText("");
            if (((RelationshipModel) event.getSource()).getRelationshipObjects(relationshipObject.getBioModelEntityObject()).size() > 0) {
                srShape.setLinkText("L");
            }
        } else if (shape instanceof ReactionRuleDiagramShape) {
            ReactionRuleDiagramShape srShape = (ReactionRuleDiagramShape) shape;
            srShape.setLinkText("");
            if (((RelationshipModel) event.getSource()).getRelationshipObjects(relationshipObject.getBioModelEntityObject()).size() > 0) {
                srShape.setLinkText("L");
            }
        }
    }
}