Examples with ImagePlaneManager cbit.image.ImagePlaneManager used on opensource projects

Example 6 with ImagePlaneManager

use of cbit.image.ImagePlaneManager in project vcell by virtualcell.

the class RasterExporter method appendSlice.

private void appendSlice(String varName, double[] unslicedData, NrrdInfo sliceNrrdInfo, CartesianMesh mesh, GeometrySpecs geometrySpecs, FileDataContainerManager fileDataContainerManager) throws IOException, DataAccessException {
    // Setup manager to extract plane
    double[] sliceData = new double[sliceNrrdInfo.getAxisSize(NRRDAxisNames.X) * sliceNrrdInfo.getAxisSize(NRRDAxisNames.Y)];
    ImagePlaneManager imagePlaneManager = createSlicer(mesh, unslicedData, geometrySpecs);
    // copy plane to double[]
    int index = 0;
    for (int y = 0; y < sliceNrrdInfo.getAxisSize(NRRDAxisNames.Y); y++) {
        for (int x = 0; x < sliceNrrdInfo.getAxisSize(NRRDAxisNames.X); x++) {
            sliceData[index] = imagePlaneManager.getImagePlaneData().getDataAsTypeRaw(x, y, 0);
            index++;
        }
    }
    NRRDHelper.appendDoubleData(sliceNrrdInfo, fileDataContainerManager, sliceData, varName);
}