Examples with BioModelNode cbit.vcell.desktop.BioModelNode used on opensource projects

Example 71 with BioModelNode

use of cbit.vcell.desktop.BioModelNode in project vcell by virtualcell.

the class MolecularTypeTreeModel method findObjectPath.

public TreePath findObjectPath(BioModelNode startNode, Object object) {
    if (startNode == null) {
        startNode = rootNode;
    }
    Object userObject = startNode.getUserObject();
    if (userObject == object) {
        return new TreePath(startNode.getPath());
    }
    for (int i = 0; i < startNode.getChildCount(); i++) {
        BioModelNode childNode = (BioModelNode) startNode.getChildAt(i);
        TreePath path = findObjectPath(childNode, object);
        if (path != null) {
            return path;
        }
    }
    return null;
}

Example 72 with BioModelNode

use of cbit.vcell.desktop.BioModelNode in project vcell by virtualcell.

the class ObservableTreeModel method findObjectPath.

public TreePath findObjectPath(BioModelNode startNode, Object object) {
    if (startNode == null) {
        startNode = rootNode;
    }
    Object userObject = startNode.getUserObject();
    if (userObject == object) {
        return new TreePath(startNode.getPath());
    }
    for (int i = 0; i < startNode.getChildCount(); i++) {
        BioModelNode childNode = (BioModelNode) startNode.getChildAt(i);
        TreePath path = findObjectPath(childNode, object);
        if (path != null) {
            return path;
        }
    }
    return null;
}

Example 73 with BioModelNode

use of cbit.vcell.desktop.BioModelNode in project vcell by virtualcell.

the class ObservableTreeModel method populateTree.

public void populateTree() {
    if (observable == null || bioModel == null) {
        return;
    }
    rootNode.setUserObject(observable);
    rootNode.removeAllChildren();
    int count = 0;
    for (SpeciesPattern sp : observable.getSpeciesPatternList()) {
        BioModelNode spNode = new BioModelNode(new SpeciesPatternLocal(sp, ++count));
        for (MolecularTypePattern mtp : sp.getMolecularTypePatterns()) {
            BioModelNode node = createMolecularTypePatternNode(mtp);
            spNode.add(node);
        }
        rootNode.add(spNode);
    }
    nodeStructureChanged(rootNode);
    // GuiUtils.treeExpandAll(ownerTree, rootNode, true);
    GuiUtils.treeExpandAllRows(ownerTree);
    observable.firePropertyChange("entityChange", null, "bbb");
}

Example 74 with BioModelNode

use of cbit.vcell.desktop.BioModelNode in project vcell by virtualcell.

the class ObservableTreeModel method createMolecularTypePatternNode.

private BioModelNode createMolecularTypePatternNode(MolecularTypePattern molecularTypePattern) {
    MolecularType molecularType = molecularTypePattern.getMolecularType();
    BioModelNode node = new BioModelNode(molecularTypePattern, true);
    for (MolecularComponent mc : molecularType.getComponentList()) {
        if (bShowDetails || molecularTypePattern.getMolecularComponentPattern(mc).isbVisible()) {
            BioModelNode n = createMolecularComponentPatternNode(molecularTypePattern.getMolecularComponentPattern(mc));
            if (n != null) {
                node.add(n);
            }
        }
    }
    return node;
}

Example 75 with BioModelNode

use of cbit.vcell.desktop.BioModelNode in project vcell by virtualcell.

the class TestingFrameworkPanel method getTestCaseOfSelectedCriteria.

/**
 * Comment
 */
public TestCaseNew getTestCaseOfSelectedCriteria() {
    TreeSelectionModel treeSelectionModel = getselectionModel();
    TreePath treePath = treeSelectionModel.getSelectionPath();
    if (treePath == null) {
        return null;
    }
    BioModelNode selectedNode = (BioModelNode) treePath.getLastPathComponent();
    if (selectedNode.getUserObject() instanceof TestCriteriaNew) {
        TreePath parentPath = treePath.getParentPath();
        BioModelNode parentNode = (BioModelNode) parentPath.getLastPathComponent();
        if (parentNode.getUserObject() instanceof TestCaseNew) {
            return (TestCaseNew) parentNode.getUserObject();
        }
    }
    return null;
}