Examples with FormalProtein cbit.vcell.dictionary.FormalProtein used on opensource projects

Example 6 with FormalProtein

use of cbit.vcell.dictionary.FormalProtein in project vcell by virtualcell.

the class DictionaryDbDriver method getProteinFromSwissProtID.

/**
 * Returns the protein referenced by the given SwissProt Accession Number
 * @return Protein
 * @param con Connection
 * @param swissProtID String
 */
public FormalProtein getProteinFromSwissProtID(Connection con, String swissProtID) throws SQLException {
    FormalProtein result = null;
    DBFormalSpecies[] dbfsArr = getDatabaseSpecies(con, null, swissProtID, false, FormalSpeciesType.protein, FormalSpeciesType.PROTEIN_SWISSPROTID, -1, false);
    if (dbfsArr != null && dbfsArr.length > 0) {
        result = (FormalProtein) dbfsArr[0];
    } else {
        throw new RuntimeException("Expecting only 1 result");
    }
    return result;
}