Examples with FieldDataDBOperationResults cbit.vcell.field.FieldDataDBOperationResults used on opensource projects

Example 6 with FieldDataDBOperationResults

use of cbit.vcell.field.FieldDataDBOperationResults in project vcell by virtualcell.

the class FieldDataDBOperationDriver method fieldDataDBOperation.

public static FieldDataDBOperationResults fieldDataDBOperation(Connection con, KeyFactory keyFactory, User user, FieldDataDBOperationSpec fieldDataDBOperationSpec) throws SQLException, DataAccessException {
    if (fieldDataDBOperationSpec.opType == FieldDataDBOperationSpec.FDDBOS_COPY_NO_CONFLICT) {
        // get all current ExtDataIDs
        ExternalDataIdentifier[] existingExtDataIDArr = FieldDataDBOperationDriver.fieldDataDBOperation(con, keyFactory, user, FieldDataDBOperationSpec.createGetExtDataIDsSpec(user)).extDataIDArr;
        // Rename FieldFunc names if necessary
        Hashtable<String, String> newNameOrigNameHash = new Hashtable<String, String>();
        for (int i = 0; i < fieldDataDBOperationSpec.sourceNames.length; i += 1) {
            String newFieldFuncName = fieldDataDBOperationSpec.sourceNames[i];
            while (true) {
                boolean bNameConflictExists = false;
                for (int j = 0; j < existingExtDataIDArr.length; j += 1) {
                    if (existingExtDataIDArr[j].getName().equals(newFieldFuncName)) {
                        bNameConflictExists = true;
                        break;
                    }
                }
                bNameConflictExists = bNameConflictExists || newNameOrigNameHash.containsKey(newFieldFuncName);
                if (!bNameConflictExists) {
                    newNameOrigNameHash.put(newFieldFuncName, fieldDataDBOperationSpec.sourceNames[i]);
                    break;
                }
                newFieldFuncName = TokenMangler.getNextEnumeratedToken(newFieldFuncName);
            }
        }
        // Add new ExternalDataIdentifier (FieldData ID) to DB
        // Copy source annotation
        FieldDataDBOperationResults sourceUserExtDataInfo = fieldDataDBOperation(con, keyFactory, user, FieldDataDBOperationSpec.createGetExtDataIDsSpec(fieldDataDBOperationSpec.sourceOwner.getVersion().getOwner()));
        ExternalDataIdentifier[] sourceUserExtDataIDArr = sourceUserExtDataInfo.extDataIDArr;
        Hashtable<String, ExternalDataIdentifier> oldNameNewIDHash = new Hashtable<String, ExternalDataIdentifier>();
        Hashtable<String, KeyValue> oldNameOldExtDataIDKey = new Hashtable<String, KeyValue>();
        String[] newFieldFuncNamesArr = newNameOrigNameHash.keySet().toArray(new String[0]);
        for (int i = 0; i < newFieldFuncNamesArr.length; i += 1) {
            // find orig annotation
            String origAnnotation = "Copy Field Data name used Field Data function\r\n" + "Source type: " + fieldDataDBOperationSpec.sourceOwner.getVType().getTypeName() + "\r\n" + "Source owner: " + fieldDataDBOperationSpec.sourceOwner.getVersion().getOwner().getName() + "\r\n" + "Source name: " + fieldDataDBOperationSpec.sourceOwner.getVersion().getName() + "\r\n" + "Original Field Data name: " + newNameOrigNameHash.get(newFieldFuncNamesArr[i]) + "\r\n" + "New Field Data name: " + newFieldFuncNamesArr[i] + "\r\n" + "Source Annotation: " + newFieldFuncNamesArr[i] + "\r\n";
            for (int j = 0; j < sourceUserExtDataInfo.extDataAnnotArr.length; j += 1) {
                String originalName = newNameOrigNameHash.get(newFieldFuncNamesArr[i]);
                if (sourceUserExtDataIDArr[j].getName().equals(originalName)) {
                    oldNameOldExtDataIDKey.put(originalName, sourceUserExtDataInfo.extDataIDArr[j].getKey());
                    origAnnotation += sourceUserExtDataInfo.extDataAnnotArr[j];
                    break;
                }
            }
            // 
            FieldDataDBOperationResults fieldDataDBOperationResults = fieldDataDBOperation(con, keyFactory, user, FieldDataDBOperationSpec.createSaveNewExtDataIDSpec(user, newFieldFuncNamesArr[i], origAnnotation));
            // errorCleanupExtDataIDV.add(fieldDataDBOperationResults.extDataID);
            String origFieldFuncName = newNameOrigNameHash.get(fieldDataDBOperationResults.extDataID.getName());
            if (origFieldFuncName == null) {
                throw new DataAccessException("couldn't find original FieldFuncName using new ExternalDataId");
            }
            oldNameNewIDHash.put(origFieldFuncName, fieldDataDBOperationResults.extDataID);
        }
        FieldDataDBOperationResults fieldDataDBOperationResults = new FieldDataDBOperationResults();
        fieldDataDBOperationResults.oldNameNewIDHash = oldNameNewIDHash;
        fieldDataDBOperationResults.oldNameOldExtDataIDKeyHash = oldNameOldExtDataIDKey;
        return fieldDataDBOperationResults;
    } else if (fieldDataDBOperationSpec.opType == FieldDataDBOperationSpec.FDDBOS_GETEXTDATAIDS) {
        String sql;
        ResultSet rset;
        if (fieldDataDBOperationSpec.bIncludeSimRefs) {
            sql = "SELECT " + ExternalDataTable.table.id.getQualifiedColName() + "," + ExternalDataTable.table.externalDataName.getQualifiedColName() + "," + ExternalDataTable.table.ownerRef.getQualifiedColName() + "," + UserTable.table.userid.getQualifiedColName() + "," + SimulationTable.table.id.getQualifiedColName() + " FROM " + ExternalDataTable.table.getTableName() + "," + MathDescTable.table.getTableName() + "," + SimulationTable.table.getTableName() + "," + MathDescExternalDataLinkTable.table.getTableName() + "," + UserTable.table.getTableName() + " WHERE " + UserTable.table.id.getQualifiedColName() + " = " + fieldDataDBOperationSpec.owner.getID() + " AND " + UserTable.table.id.getQualifiedColName() + " = " + ExternalDataTable.table.ownerRef.getQualifiedColName() + " AND " + ExternalDataTable.table.id.getQualifiedColName() + " = " + MathDescExternalDataLinkTable.table.extDataRef.getQualifiedColName() + " AND " + MathDescTable.table.id.getQualifiedColName() + " = " + MathDescExternalDataLinkTable.table.mathDescRef.getQualifiedColName() + " AND " + MathDescTable.table.id.getQualifiedColName() + " = " + SimulationTable.table.mathRef.getQualifiedColName();
        } else {
            sql = "SELECT " + ExternalDataTable.table.getTableName() + ".*" + "," + UserTable.table.userid.getQualifiedColName() + " FROM " + ExternalDataTable.table.getTableName() + "," + UserTable.table.getTableName() + " WHERE " + ExternalDataTable.table.ownerRef + "=" + fieldDataDBOperationSpec.owner.getID() + " AND " + UserTable.table.id.getQualifiedColName() + " = " + ExternalDataTable.table.ownerRef.getQualifiedColName();
        }
        Statement stmt = con.createStatement();
        Vector<ExternalDataIdentifier> extDataIDV = new Vector<ExternalDataIdentifier>();
        Vector<String> extDataAnnotV = new Vector<String>();
        HashMap<ExternalDataIdentifier, Vector<KeyValue>> extDataIDSimRefsH = null;
        try {
            rset = stmt.executeQuery(sql);
            while (rset.next()) {
                ExternalDataIdentifier extDataID = ExternalDataTable.table.getExternalDataIdentifier(rset);
                if (!fieldDataDBOperationSpec.bIncludeSimRefs && !extDataIDV.contains(extDataID)) {
                    extDataIDV.add(extDataID);
                    extDataAnnotV.add(ExternalDataTable.table.getExternalDataAnnot(rset));
                }
                if (fieldDataDBOperationSpec.bIncludeSimRefs) {
                    if (extDataIDSimRefsH == null) {
                        extDataIDSimRefsH = new HashMap<ExternalDataIdentifier, Vector<KeyValue>>();
                    }
                    Vector<KeyValue> simRefV = extDataIDSimRefsH.get(extDataID);
                    if (simRefV == null) {
                        simRefV = new Vector<KeyValue>();
                        extDataIDSimRefsH.put(extDataID, simRefV);
                    }
                    simRefV.add(new KeyValue(rset.getBigDecimal(SimulationTable.table.id.getUnqualifiedColName())));
                }
            }
        } finally {
            stmt.close();
        }
        FieldDataDBOperationResults fieldDataDBOperationResults = new FieldDataDBOperationResults();
        fieldDataDBOperationResults.extDataIDArr = extDataIDV.toArray(new ExternalDataIdentifier[extDataIDV.size()]);
        fieldDataDBOperationResults.extDataAnnotArr = extDataAnnotV.toArray(new String[extDataAnnotV.size()]);
        fieldDataDBOperationResults.extdataIDAndSimRefH = extDataIDSimRefsH;
        return fieldDataDBOperationResults;
    } else if (fieldDataDBOperationSpec.opType == FieldDataDBOperationSpec.FDDBOS_SAVEEXTDATAID) {
        if (!fieldDataDBOperationSpec.newExtDataIDName.equals(TokenMangler.fixTokenStrict(fieldDataDBOperationSpec.newExtDataIDName))) {
            throw new DataAccessException("Error inserting Field Data name " + fieldDataDBOperationSpec.newExtDataIDName + "\n" + "Field Data names can contain only letters,digits and underscores");
        }
        KeyValue newKey = keyFactory.getNewKey(con);
        String sql = "INSERT INTO " + ExternalDataTable.table.getTableName() + " " + ExternalDataTable.table.getSQLColumnList() + " VALUES " + ExternalDataTable.table.getSQLValueList(newKey, user, fieldDataDBOperationSpec.newExtDataIDName, fieldDataDBOperationSpec.annotation);
        DbDriver.updateCleanSQL(con, sql);
        ExternalDataIdentifier[] fdiArr = FieldDataDBOperationDriver.fieldDataDBOperation(con, keyFactory, user, FieldDataDBOperationSpec.createGetExtDataIDsSpec(user)).extDataIDArr;
        for (int i = 0; i < fdiArr.length; i++) {
            if (fdiArr[i].getName().equals(fieldDataDBOperationSpec.newExtDataIDName)) {
                FieldDataDBOperationResults fieldDataDBOperationResults = new FieldDataDBOperationResults();
                fieldDataDBOperationResults.extDataID = fdiArr[i];
                ;
                return fieldDataDBOperationResults;
            }
        }
        throw new DataAccessException("Unable to retrieve inserted ExternalDataIdentifier " + fieldDataDBOperationSpec.newExtDataIDName);
    } else if (fieldDataDBOperationSpec.opType == FieldDataDBOperationSpec.FDDBOS_DELETE) {
        String sql = "DELETE" + " FROM " + ExternalDataTable.table.getTableName() + " WHERE " + ExternalDataTable.table.ownerRef + " = " + user.getID() + " AND " + ExternalDataTable.table.id + " = " + fieldDataDBOperationSpec.specEDI.getKey().toString();
        DbDriver.updateCleanSQL(con, sql);
        return new FieldDataDBOperationResults();
    }
    throw new DataAccessException("Unknown FieldDataDBOperation " + fieldDataDBOperationSpec.opType);
}

Example 7 with FieldDataDBOperationResults

use of cbit.vcell.field.FieldDataDBOperationResults in project vcell by virtualcell.

the class DBTopLevel method fieldDataDBOperation.

/**
 * Insert the method's description here.
 * Creation date: (9/25/2003 7:57:54 AM)
 * @return cbit.vcell.modeldb.VCInfoContainer
 * @param user cbit.vcell.server.User
 */
FieldDataDBOperationResults fieldDataDBOperation(User user, FieldDataDBOperationSpec fieldDataDBOperationSpec, boolean bEnableRetry) throws SQLException, DataAccessException {
    Object lock = new Object();
    Connection con = conFactory.getConnection(lock);
    try {
        FieldDataDBOperationResults fieldDataDBOperationResults = DbDriver.fieldDataDBOperation(con, conFactory.getKeyFactory(), user, fieldDataDBOperationSpec);
        con.commit();
        return fieldDataDBOperationResults;
    } catch (Throwable e) {
        lg.error(e.getMessage(), e);
        try {
            con.rollback();
        } catch (Throwable rbe) {
            // rbe.printStackTrace(System.out);
            lg.error("exception during rollback, bEnableRetry = " + bEnableRetry);
        }
        if (bEnableRetry && isBadConnection(con)) {
            conFactory.failed(con, lock);
            return fieldDataDBOperation(user, fieldDataDBOperationSpec, false);
        } else {
            handle_DataAccessException_SQLException(e);
            return null;
        }
    } finally {
        conFactory.release(con, lock);
    }
}