Examples with SimulationContext cbit.vcell.mapping.SimulationContext used on opensource projects

Example 71 with SimulationContext

use of cbit.vcell.mapping.SimulationContext in project vcell by virtualcell.

the class SimulationWorkspaceModelInfo method getContextName.

/**
 * Insert the method's description here.
 * Creation date: (9/25/2005 11:04:29 AM)
 * @return java.lang.String
 */
public java.lang.String getContextName() {
    String results = null;
    if (simulationOwner instanceof MathModel) {
        MathModel mathModel = (MathModel) simulationOwner;
        results = mathModel.getName();
    } else if (simulationOwner instanceof SimulationContext) {
        SimulationContext simContext = (SimulationContext) simulationOwner;
        results = simContext.getBioModel().getName() + "::" + simContext.getName();
    }
    return results;
}

Example 72 with SimulationContext

use of cbit.vcell.mapping.SimulationContext in project vcell by virtualcell.

the class InitialConditionsPanel method setSimulationContext.

/**
 * Sets the simulationContext property (cbit.vcell.mapping.SimulationContext) value.
 * @param simulationContext The new value for the property.
 * @see #getSimulationContext
 */
public void setSimulationContext(SimulationContext newValue) {
    SimulationContext oldValue = fieldSimulationContext;
    if (oldValue != null) {
        oldValue.removePropertyChangeListener(ivjEventHandler);
    }
    fieldSimulationContext = newValue;
    if (newValue != null) {
        newValue.addPropertyChangeListener(ivjEventHandler);
    }
    tableModel.setSimulationContext(fieldSimulationContext);
    updateTopScrollPanel();
}

Example 73 with SimulationContext

use of cbit.vcell.mapping.SimulationContext in project vcell by virtualcell.

the class MicroscopeMeasurementPanel method setSimulationContext.

public void setSimulationContext(SimulationContext newValue) {
    if (this.simulationContext == newValue) {
        return;
    }
    SimulationContext oldValue = newValue;
    if (oldValue != null) {
        oldValue.getModel().removePropertyChangeListener(internalEventHandler);
        oldValue.getMicroscopeMeasurement().removePropertyChangeListener(internalEventHandler);
    }
    this.simulationContext = newValue;
    if (newValue != null) {
        newValue.getModel().addPropertyChangeListener(internalEventHandler);
        newValue.getMicroscopeMeasurement().addPropertyChangeListener(internalEventHandler);
    }
    refreshInterface();
}

Example 74 with SimulationContext

use of cbit.vcell.mapping.SimulationContext in project vcell by virtualcell.

the class ModelProcessSpecsTableModel method setSimulationContext.

/**
 * Sets the simulationContext property (cbit.vcell.mapping.SimulationContext) value.
 * @param simulationContext The new value for the property.
 * @see #getSimulationContext
 */
public void setSimulationContext(SimulationContext simulationContext) {
    SimulationContext oldValue = fieldSimulationContext;
    if (oldValue != null) {
        oldValue.removePropertyChangeListener(this);
        ReactionContext reactionContext = oldValue.getReactionContext();
        reactionContext.removePropertyChangeListener(this);
        ReactionSpec[] oldReactionSpecs = reactionContext.getReactionSpecs();
        for (int i = 0; i < oldReactionSpecs.length; i++) {
            oldReactionSpecs[i].getReactionStep().removePropertyChangeListener(this);
            oldReactionSpecs[i].removePropertyChangeListener(this);
        }
        ReactionRuleSpec[] oldReactionRuleSpecs = reactionContext.getReactionRuleSpecs();
        for (int i = 0; i < oldReactionRuleSpecs.length; i++) {
            oldReactionRuleSpecs[i].getReactionRule().removePropertyChangeListener(this);
            oldReactionRuleSpecs[i].removePropertyChangeListener(this);
        }
    }
    fieldSimulationContext = simulationContext;
    refreshColumns();
    if (simulationContext != null) {
        simulationContext.addPropertyChangeListener(this);
        ReactionContext reactionContext = fieldSimulationContext.getReactionContext();
        reactionContext.addPropertyChangeListener(this);
        ReactionSpec[] newReactionSpecs = reactionContext.getReactionSpecs();
        for (int i = 0; i < newReactionSpecs.length; i++) {
            newReactionSpecs[i].getReactionStep().addPropertyChangeListener(this);
            newReactionSpecs[i].addPropertyChangeListener(this);
        }
        ReactionRuleSpec[] newReactionRuleSpecs = reactionContext.getReactionRuleSpecs();
        for (int i = 0; i < newReactionRuleSpecs.length; i++) {
            newReactionRuleSpecs[i].getReactionRule().addPropertyChangeListener(this);
            newReactionRuleSpecs[i].addPropertyChangeListener(this);
        }
    }
    firePropertyChange("simulationContext", oldValue, simulationContext);
}

Example 75 with SimulationContext

use of cbit.vcell.mapping.SimulationContext in project vcell by virtualcell.

the class SpeciesContextSpecsTableModel method setSimulationContext.

/**
 * Sets the simulationContext property (cbit.vcell.mapping.SimulationContext) value.
 * @param simulationContext The new value for the property.
 * @see #getSimulationContext
 */
public void setSimulationContext(SimulationContext simulationContext) {
    SimulationContext oldValue = fieldSimulationContext;
    int oldColumnCount = getColumnCount();
    if (oldValue != null) {
        oldValue.removePropertyChangeListener(this);
        oldValue.getGeometryContext().removePropertyChangeListener(this);
        updateListenersReactionContext(oldValue.getReactionContext(), true);
    }
    fieldSimulationContext = simulationContext;
    refreshColumns();
    int newColumnCount = getColumnCount();
    if (oldColumnCount != newColumnCount) {
        fireTableStructureChanged();
    }
    if (simulationContext != null) {
        simulationContext.addPropertyChangeListener(this);
        simulationContext.getGeometryContext().addPropertyChangeListener(this);
        updateListenersReactionContext(simulationContext.getReactionContext(), false);
        autoCompleteSymbolFilter = simulationContext.getAutoCompleteSymbolFilter();
        refreshData();
    }
}