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Example 21 with VCMessageSession

use of cbit.vcell.message.VCMessageSession in project vcell by virtualcell.

the class RestDatabaseService method startSimulation.

public SimulationRep startSimulation(BiomodelSimulationStartServerResource resource, User vcellUser) throws PermissionException, ObjectNotFoundException, DataAccessException, SQLException {
    // resource.getRequestAttributes().get(VCellApiApplication.SIMDATAID);
    String simId = resource.getAttribute(VCellApiApplication.SIMULATIONID);
    KeyValue simKey = new KeyValue(simId);
    SimulationRep simRep = getSimulationRep(simKey);
    if (simRep == null) {
        throw new ObjectNotFoundException("Simulation with key " + simKey + " not found");
    }
    User owner = simRep.getOwner();
    if (!owner.compareEqual(vcellUser)) {
        throw new PermissionException("not authorized to start simulation");
    }
    VCMessageSession rpcSession = vcMessagingService.createProducerSession();
    try {
        UserLoginInfo userLoginInfo = new UserLoginInfo(vcellUser.getName(), null);
        try {
            userLoginInfo.setUser(vcellUser);
        } catch (Exception e) {
            e.printStackTrace();
            throw new DataAccessException(e.getMessage());
        }
        RpcSimServerProxy rpcSimServerProxy = new RpcSimServerProxy(userLoginInfo, rpcSession);
        VCSimulationIdentifier vcSimID = new VCSimulationIdentifier(simKey, owner);
        rpcSimServerProxy.startSimulation(vcellUser, vcSimID, simRep.getScanCount());
        return simRep;
    } finally {
        rpcSession.close();
    }
}
Also used : PermissionException(org.vcell.util.PermissionException) VCSimulationIdentifier(cbit.vcell.solver.VCSimulationIdentifier) KeyValue(org.vcell.util.document.KeyValue) User(org.vcell.util.document.User) RpcSimServerProxy(org.vcell.rest.rpc.RpcSimServerProxy) VCMessageSession(cbit.vcell.message.VCMessageSession) ObjectNotFoundException(org.vcell.util.ObjectNotFoundException) BigString(org.vcell.util.BigString) UserLoginInfo(org.vcell.util.document.UserLoginInfo) SimulationRep(cbit.vcell.modeldb.SimulationRep) PropertyVetoException(java.beans.PropertyVetoException) MatrixException(cbit.vcell.matrix.MatrixException) ParseException(java.text.ParseException) ModelException(cbit.vcell.model.ModelException) PermissionException(org.vcell.util.PermissionException) ObjectNotFoundException(org.vcell.util.ObjectNotFoundException) SQLException(java.sql.SQLException) XmlParseException(cbit.vcell.xml.XmlParseException) DataAccessException(org.vcell.util.DataAccessException) ExpressionException(cbit.vcell.parser.ExpressionException) UseridIDExistsException(org.vcell.util.UseridIDExistsException) MappingException(cbit.vcell.mapping.MappingException) MathException(cbit.vcell.math.MathException) DataAccessException(org.vcell.util.DataAccessException)

Example 22 with VCMessageSession

use of cbit.vcell.message.VCMessageSession in project vcell by virtualcell.

the class RestDatabaseService method stopSimulation.

public SimulationRep stopSimulation(BiomodelSimulationStopServerResource resource, User vcellUser) throws PermissionException, ObjectNotFoundException, DataAccessException, SQLException {
    // resource.getRequestAttributes().get(VCellApiApplication.SIMDATAID);
    String simId = resource.getAttribute(VCellApiApplication.SIMULATIONID);
    KeyValue simKey = new KeyValue(simId);
    SimulationRep simRep = getSimulationRep(simKey);
    if (simRep == null) {
        throw new ObjectNotFoundException("Simulation with key " + simKey + " not found");
    }
    User owner = simRep.getOwner();
    if (!owner.compareEqual(vcellUser)) {
        throw new PermissionException("not authorized to stop simulation");
    }
    VCMessageSession rpcSession = vcMessagingService.createProducerSession();
    try {
        UserLoginInfo userLoginInfo = new UserLoginInfo(vcellUser.getName(), null);
        try {
            userLoginInfo.setUser(vcellUser);
        } catch (Exception e) {
            e.printStackTrace();
            throw new DataAccessException(e.getMessage());
        }
        RpcSimServerProxy rpcSimServerProxy = new RpcSimServerProxy(userLoginInfo, rpcSession);
        VCSimulationIdentifier vcSimID = new VCSimulationIdentifier(simKey, owner);
        rpcSimServerProxy.stopSimulation(vcellUser, vcSimID);
        return simRep;
    } finally {
        rpcSession.close();
    }
}
Also used : PermissionException(org.vcell.util.PermissionException) VCSimulationIdentifier(cbit.vcell.solver.VCSimulationIdentifier) KeyValue(org.vcell.util.document.KeyValue) User(org.vcell.util.document.User) RpcSimServerProxy(org.vcell.rest.rpc.RpcSimServerProxy) VCMessageSession(cbit.vcell.message.VCMessageSession) ObjectNotFoundException(org.vcell.util.ObjectNotFoundException) BigString(org.vcell.util.BigString) UserLoginInfo(org.vcell.util.document.UserLoginInfo) SimulationRep(cbit.vcell.modeldb.SimulationRep) PropertyVetoException(java.beans.PropertyVetoException) MatrixException(cbit.vcell.matrix.MatrixException) ParseException(java.text.ParseException) ModelException(cbit.vcell.model.ModelException) PermissionException(org.vcell.util.PermissionException) ObjectNotFoundException(org.vcell.util.ObjectNotFoundException) SQLException(java.sql.SQLException) XmlParseException(cbit.vcell.xml.XmlParseException) DataAccessException(org.vcell.util.DataAccessException) ExpressionException(cbit.vcell.parser.ExpressionException) UseridIDExistsException(org.vcell.util.UseridIDExistsException) MappingException(cbit.vcell.mapping.MappingException) MathException(cbit.vcell.math.MathException) DataAccessException(org.vcell.util.DataAccessException)

Aggregations

VCMessageSession (cbit.vcell.message.VCMessageSession)22 KeyValue (org.vcell.util.document.KeyValue)11 VCMessage (cbit.vcell.message.VCMessage)10 VCMessagingException (cbit.vcell.message.VCMessagingException)10 User (org.vcell.util.document.User)8 VCMessagingService (cbit.vcell.message.VCMessagingService)7 VCQueueConsumer (cbit.vcell.message.VCQueueConsumer)7 VCMessageSelector (cbit.vcell.message.VCMessageSelector)6 VCSimulationIdentifier (cbit.vcell.solver.VCSimulationIdentifier)6 XmlParseException (cbit.vcell.xml.XmlParseException)6 BigString (org.vcell.util.BigString)6 DataAccessException (org.vcell.util.DataAccessException)6 ObjectNotFoundException (org.vcell.util.ObjectNotFoundException)6 UserLoginInfo (org.vcell.util.document.UserLoginInfo)6 QueueListener (cbit.vcell.message.VCQueueConsumer.QueueListener)5 SimulationRep (cbit.vcell.modeldb.SimulationRep)5 MappingException (cbit.vcell.mapping.MappingException)4 MathException (cbit.vcell.math.MathException)4 MatrixException (cbit.vcell.matrix.MatrixException)4 ServerMessagingDelegate (cbit.vcell.message.server.ServerMessagingDelegate)4