Examples with FRAPModel cbit.vcell.microscopy.FRAPModel used on opensource projects

Example 11 with FRAPModel

use of cbit.vcell.microscopy.FRAPModel in project vcell by virtualcell.

the class ModelTypesDescriptor method aboutToDisplayPanel.

public void aboutToDisplayPanel() {
    FRAPStudy fStudy = batchRunWorkspace.getWorkingFrapStudy();
    // if there are models selected and saved, load the model types. otherwise, apply default(diffusion with one component is selected).
    if (fStudy.getModels() != null && fStudy.getModels().length > 0 && fStudy.getSelectedModels().size() > 0) {
        modelTypesPanel.clearAllSelected();
        FRAPModel[] models = fStudy.getModels();
        if (models[FRAPModel.IDX_MODEL_DIFF_ONE_COMPONENT] != null) {
            modelTypesPanel.setDiffOneSelected(true);
        }
        if (models[FRAPModel.IDX_MODEL_DIFF_TWO_COMPONENTS] != null) {
            modelTypesPanel.setDiffTwoSelected(true);
        }
        if (models[FRAPModel.IDX_MODEL_REACTION_OFF_RATE] != null) {
            modelTypesPanel.setReactionOffRateSelected(true);
        }
    } else // new frap document
    {
        modelTypesPanel.clearAllSelected();
        modelTypesPanel.setDiffOneSelected(true);
    }
}

Example 12 with FRAPModel

use of cbit.vcell.microscopy.FRAPModel in project vcell by virtualcell.

the class EstParams_OneDiffComponentDescriptor method preNextProcess.

// save model parameters
public ArrayList<AsynchClientTask> preNextProcess() {
    // create AsynchClientTask arraylist
    ArrayList<AsynchClientTask> taskArrayList = new ArrayList<AsynchClientTask>();
    AsynchClientTask saveParametersTask = new AsynchClientTask("", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        public void run(Hashtable<String, Object> hashTable) throws Exception {
            Parameter[] params = ((EstParams_OneDiffComponentPanel) getPanelComponent()).getCurrentParameters();
            FRAPModel frapModel = getFrapWorkspace().getWorkingFrapStudy().getFrapModel(FRAPModel.IDX_MODEL_DIFF_ONE_COMPONENT);
            frapModel.setModelParameters(params);
            frapModel.setData(((EstParams_OneDiffComponentPanel) getPanelComponent()).getCurrentEstimationResults());
        }
    };
    taskArrayList.add(saveParametersTask);
    return taskArrayList;
}

Example 13 with FRAPModel

use of cbit.vcell.microscopy.FRAPModel in project vcell by virtualcell.

the class EstParams_ReacBindingDescriptor method saveModelParameters.

private void saveModelParameters() {
    Parameter[] params = ((EstParams_ReacBindingPanel) getPanelComponent()).getCurrentParameters();
    FRAPModel frapModel = getFrapWorkspace().getWorkingFrapStudy().getFrapModel(FRAPModel.IDX_MODEL_DIFF_BINDING);
    frapModel.setModelParameters(params);
    frapModel.setData(((EstParams_ReacBindingPanel) getPanelComponent()).getCurrentSimResults());
    frapModel.setTimepoints(((EstParams_ReacBindingPanel) getPanelComponent()).getCurrentRawSimTimePoints());
}