Examples with SolverStatus cbit.vcell.solver.server.SolverStatus used on opensource projects

Example 6 with SolverStatus

use of cbit.vcell.solver.server.SolverStatus in project vcell by virtualcell.

the class CVodeSolverStandalone method initialize.

/**
 *  This method takes the place of the old runUnsteady()...
 */
protected void initialize() throws SolverException {
    fireSolverStarting(SimulationMessage.MESSAGE_SOLVEREVENT_STARTING_INIT);
    super.initialize();
    String inputFilename = getInputFilename();
    setSolverStatus(new SolverStatus(SolverStatus.SOLVER_RUNNING, SimulationMessage.MESSAGE_SOLVER_RUNNING_INPUT_FILE));
    fireSolverStarting(SimulationMessage.MESSAGE_SOLVEREVENT_STARTING_INPUT_FILE);
    PrintWriter pw = null;
    try {
        pw = new java.io.PrintWriter(inputFilename);
        CVodeFileWriter cvodeFileWriter = new CVodeFileWriter(pw, simTask, bMessaging);
        cvodeFileWriter.write();
    } catch (Exception e) {
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_ABORTED, SimulationMessage.solverAborted("CVODE solver could not generate input file: " + e.getMessage())));
        e.printStackTrace(System.out);
        throw new SolverException("CVODE solver could not generate input file: " + e.getMessage());
    } finally {
        if (pw != null) {
            pw.close();
        }
    }
    setSolverStatus(new SolverStatus(SolverStatus.SOLVER_RUNNING, SimulationMessage.MESSAGE_SOLVER_RUNNING_START));
    setMathExecutable(new MathExecutable(getMathExecutableCommand(), getSaveDirectory()));
}

Example 7 with SolverStatus

use of cbit.vcell.solver.server.SolverStatus in project vcell by virtualcell.

the class AbstractJavaSolver method runSolver.

/**
 * Insert the method's description here.
 * Creation date: (6/26/2001 3:08:31 PM)
 */
public void runSolver() {
    try {
        fieldRunning = true;
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_STARTING, SimulationMessage.MESSAGE_SOLVER_STARTING_INIT));
        fireSolverStarting(SimulationMessage.MESSAGE_SOLVEREVENT_STARTING_INIT);
        initialize();
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_RUNNING, SimulationMessage.MESSAGE_SOLVER_RUNNING_START));
        fireSolverProgress(getProgress());
        integrate();
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_FINISHED, SimulationMessage.MESSAGE_SOLVER_FINISHED));
        fireSolverFinished();
    } catch (SolverException integratorException) {
        lg.error(integratorException.getMessage(), integratorException);
        SimulationMessage simulationMessage = SimulationMessage.solverAborted(integratorException.getMessage());
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_ABORTED, simulationMessage));
        fireSolverAborted(simulationMessage);
    } catch (IOException ioException) {
        lg.error(ioException.getMessage(), ioException);
        SimulationMessage simulationMessage = SimulationMessage.solverAborted(ioException.getMessage());
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_ABORTED, simulationMessage));
        fireSolverAborted(simulationMessage);
    } catch (UserStopException userStopException) {
        lg.error(userStopException.getMessage(), userStopException);
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_STOPPED, SimulationMessage.solverStopped(userStopException.getMessage())));
        fireSolverStopped();
    } catch (Exception e) {
        lg.error("AbstractJavaSolver.runSolver() : Caught Throwable instead of SolverException -- THIS EXCEPTION SHOULD NOT HAPPEN!", e);
        SimulationMessage simulationMessage = SimulationMessage.solverAborted(e.getMessage());
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_ABORTED, simulationMessage));
        fireSolverAborted(simulationMessage);
    } finally {
        fieldRunning = false;
    }
}

Example 8 with SolverStatus

use of cbit.vcell.solver.server.SolverStatus in project vcell by virtualcell.

the class IDASolverStandalone method initialize.

/**
 *  This method takes the place of the old runUnsteady()...
 */
protected void initialize() throws SolverException {
    fireSolverStarting(SimulationMessage.MESSAGE_SOLVEREVENT_STARTING_INIT);
    super.initialize();
    String inputFilename = getInputFilename();
    setSolverStatus(new SolverStatus(SolverStatus.SOLVER_RUNNING, SimulationMessage.MESSAGE_SOLVER_RUNNING_INPUT_FILE));
    fireSolverStarting(SimulationMessage.MESSAGE_SOLVEREVENT_STARTING_INPUT_FILE);
    PrintWriter pw = null;
    try {
        pw = new PrintWriter(inputFilename);
        IDAFileWriter idaFileWriter = new IDAFileWriter(pw, simTask, bMessaging);
        idaFileWriter.write();
    } catch (Exception e) {
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_ABORTED, SimulationMessage.solverAborted("Could not generate input file: " + e.getMessage())));
        e.printStackTrace(System.out);
        throw new SolverException("IDA solver could not generate input file: " + e.getMessage());
    } finally {
        if (pw != null) {
            pw.close();
        }
    }
    setSolverStatus(new SolverStatus(SolverStatus.SOLVER_RUNNING, SimulationMessage.MESSAGE_SOLVER_RUNNING_START));
    setMathExecutable(new MathExecutable(getMathExecutableCommand(), getSaveDirectory()));
}

Example 9 with SolverStatus

use of cbit.vcell.solver.server.SolverStatus in project vcell by virtualcell.

the class MovingBoundarySolver method initialize.

/**
 * This method was created by a SmartGuide.
 */
protected void initialize() throws SolverException {
    writeFunctionsFile();
    setSolverStatus(new SolverStatus(SolverStatus.SOLVER_RUNNING, SimulationMessage.MESSAGE_SOLVER_RUNNING_INIT));
    fireSolverStarting(SimulationMessage.MESSAGE_SOLVEREVENT_STARTING_INIT);
    setSolverStatus(new SolverStatus(SolverStatus.SOLVER_RUNNING, SimulationMessage.MESSAGE_SOLVER_RUNNING_START));
    try (PrintWriter pw = new PrintWriter(inputFilename)) {
        MovingBoundaryFileWriter mbfw = new MovingBoundaryFileWriter(pw, simTask, resampledGeometry, bMessaging, getBaseName());
        mbfw.write();
    } catch (Exception e) {
        throw new SolverException("Can't open input file " + inputFilename, e);
    }
    setMathExecutable(new MathExecutable(getMathExecutableCommand(), getSaveDirectory()));
}

Example 10 with SolverStatus

use of cbit.vcell.solver.server.SolverStatus in project vcell by virtualcell.

the class GibsonSolver method initialize.

/**
 *  This method takes the place of the old runUnsteady()...
 */
protected void initialize() throws SolverException {
    if (lg.isTraceEnabled())
        lg.trace("StochSolver.initialize()");
    fireSolverStarting(SimulationMessage.MESSAGE_SOLVEREVENT_STARTING_INIT);
    writeFunctionsFile();
    writeLogFile();
    String inputFilename = getInputFilename();
    if (lg.isTraceEnabled())
        lg.trace("StochSolver.initialize() baseName = " + getBaseName());
    setSolverStatus(new SolverStatus(SolverStatus.SOLVER_RUNNING, SimulationMessage.MESSAGE_SOLVER_RUNNING_INPUT_FILE));
    fireSolverStarting(SimulationMessage.MESSAGE_SOLVEREVENT_STARTING_INPUT_FILE);
    PrintWriter pw = null;
    try {
        pw = new PrintWriter(inputFilename);
        StochFileWriter stFileWriter = new StochFileWriter(pw, simTask, bMessaging);
        stFileWriter.write();
    } catch (Exception e) {
        setSolverStatus(new SolverStatus(SolverStatus.SOLVER_ABORTED, SimulationMessage.solverAborted("Could not generate input file: " + e.getMessage())));
        e.printStackTrace(System.out);
        throw new SolverException("solver input file exception: " + e.getMessage());
    } finally {
        if (pw != null) {
            pw.close();
        }
    }
    setSolverStatus(new SolverStatus(SolverStatus.SOLVER_RUNNING, SimulationMessage.MESSAGE_SOLVER_RUNNING_START));
    // get executable path+name.
    setMathExecutable(new MathExecutable(getMathExecutableCommand(), getSaveDirectory()));
// setMathExecutable(new cbit.vcell.solvers.MathExecutable(executableName + " gibson " + getBaseName() + ".stochInput" + " " + getBaseName() + ".stoch"));
}