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Example 6 with IntArrayList

use of cern.colt.list.IntArrayList in project tdq-studio-se by Talend.

the class AbstractIntIntMap method keys.

/**
 * Returns a list filled with all keys contained in the receiver.
 * The returned list has a size that equals <tt>this.size()</tt>.
 * Iteration order is guaranteed to be <i>identical</i> to the order used by method {@link #forEachKey(IntProcedure)}.
 * <p>
 * This method can be used to iterate over the keys of the receiver.
 *
 * @return the keys.
 */
public IntArrayList keys() {
    IntArrayList list = new IntArrayList(size());
    keys(list);
    return list;
}
Also used : IntArrayList(cern.colt.list.IntArrayList)

Example 7 with IntArrayList

use of cern.colt.list.IntArrayList in project tdq-studio-se by Talend.

the class DoubleMatrix1D method viewSelection.

/**
 *Constructs and returns a new <i>selection view</i> that is a matrix holding the cells matching the given condition.
 *Applies the condition to each cell and takes only those cells where <tt>condition.apply(get(i))</tt> yields <tt>true</tt>.
 *<p>
 *<b>Example:</b>
 *<br>
 *<pre>
 *// extract and view all cells with even value
 *matrix = 0 1 2 3
 *matrix.viewSelection(
 *&nbsp;&nbsp;&nbsp;new DoubleProcedure() {
 *&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;public final boolean apply(double a) { return a % 2 == 0; }
 *&nbsp;&nbsp;&nbsp;}
 *);
 *-->
 *matrix ==  0 2
 *</pre>
 *For further examples, see the <a href="package-summary.html#FunctionObjects">package doc</a>.
 *The returned view is backed by this matrix, so changes in the returned view are reflected in this matrix, and vice-versa.
 *
 *@param  condition The condition to be matched.
 *@return the new view.
 */
public DoubleMatrix1D viewSelection(cern.colt.function.DoubleProcedure condition) {
    IntArrayList matches = new IntArrayList();
    for (int i = 0; i < size; i++) {
        if (condition.apply(getQuick(i)))
            matches.add(i);
    }
    matches.trimToSize();
    return viewSelection(matches.elements());
}
Also used : IntArrayList(cern.colt.list.IntArrayList)

Example 8 with IntArrayList

use of cern.colt.list.IntArrayList in project tdq-studio-se by Talend.

the class DoubleMatrix3D method viewSelection.

/**
 *Constructs and returns a new <i>selection view</i> that is a matrix holding all <b>slices</b> matching the given condition.
 *Applies the condition to each slice and takes only those where <tt>condition.apply(viewSlice(i))</tt> yields <tt>true</tt>.
 *To match rows or columns, use a dice view.
 *<p>
 *<b>Example:</b>
 *<br>
 *<pre>
 *// extract and view all slices which have an aggregate sum > 1000
 *matrix.viewSelection(
 *&nbsp;&nbsp;&nbsp;new DoubleMatrix2DProcedure() {
 *&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;public final boolean apply(DoubleMatrix2D m) { return m.zSum > 1000; }
 *&nbsp;&nbsp;&nbsp;}
 *);
 *</pre>
 *For further examples, see the <a href="package-summary.html#FunctionObjects">package doc</a>.
 *The returned view is backed by this matrix, so changes in the returned view are reflected in this matrix, and vice-versa.
 *
 *@param  condition The condition to be matched.
 *@return the new view.
 */
public DoubleMatrix3D viewSelection(DoubleMatrix2DProcedure condition) {
    IntArrayList matches = new IntArrayList();
    for (int i = 0; i < slices; i++) {
        if (condition.apply(viewSlice(i)))
            matches.add(i);
    }
    matches.trimToSize();
    // take all rows and columns
    return viewSelection(matches.elements(), null, null);
}
Also used : IntArrayList(cern.colt.list.IntArrayList)

Example 9 with IntArrayList

use of cern.colt.list.IntArrayList in project tdq-studio-se by Talend.

the class AbstractDoubleIntMap method values.

/**
 * Returns a list filled with all values contained in the receiver.
 * The returned list has a size that equals <tt>this.size()</tt>.
 * Iteration order is guaranteed to be <i>identical</i> to the order used by method {@link #forEachKey(DoubleProcedure)}.
 * <p>
 * This method can be used to iterate over the values of the receiver.
 *
 * @return the values.
 */
public IntArrayList values() {
    IntArrayList list = new IntArrayList(size());
    values(list);
    return list;
}
Also used : IntArrayList(cern.colt.list.IntArrayList)

Example 10 with IntArrayList

use of cern.colt.list.IntArrayList in project tdq-studio-se by Talend.

the class AbstractIntDoubleMap method toStringByValue.

/**
 * Returns a string representation of the receiver, containing
 * the String representation of each key-value pair, sorted ascending by value.
 */
public String toStringByValue() {
    IntArrayList theKeys = new IntArrayList();
    keysSortedByValue(theKeys);
    StringBuffer buf = new StringBuffer();
    buf.append("[");
    int maxIndex = theKeys.size() - 1;
    for (int i = 0; i <= maxIndex; i++) {
        int key = theKeys.get(i);
        buf.append(String.valueOf(key));
        buf.append("->");
        buf.append(String.valueOf(get(key)));
        if (i < maxIndex)
            buf.append(", ");
    }
    buf.append("]");
    return buf.toString();
}
Also used : IntArrayList(cern.colt.list.IntArrayList)

Aggregations

IntArrayList (cern.colt.list.IntArrayList)26 DoubleArrayList (cern.colt.list.DoubleArrayList)6 ExperimentalFactor (ubic.gemma.model.expression.experiment.ExperimentalFactor)2 ArrayList (java.util.ArrayList)1 ChiSquaredDistribution (org.apache.commons.math3.distribution.ChiSquaredDistribution)1 ChiSquareTest (org.apache.commons.math3.stat.inference.ChiSquareTest)1 ExpressionDataDoubleMatrix (ubic.gemma.core.datastructure.matrix.ExpressionDataDoubleMatrix)1 CompositeSequence (ubic.gemma.model.expression.designElement.CompositeSequence)1 FactorValue (ubic.gemma.model.expression.experiment.FactorValue)1