Examples with Config coloring.Config used on opensource projects

Example 11 with Config

use of coloring.Config in project ASCIIGenome by dariober.

the class TrackWigglesTest method canPrintBedGraph.

@Test
public void canPrintBedGraph() throws InvalidGenomicCoordsException, IOException, InvalidRecordException, ClassNotFoundException, SQLException, InvalidColourException, InvalidConfigException {
    new Config(null);
    String url = "test_data/test.bedGraph.gz";
    int yMaxLines = 5;
    GenomicCoords gc = new GenomicCoords("chr1:1-22", 80, null, null);
    TrackWiggles tw = new TrackWiggles(url, gc, 4);
    tw.setYLimitMax(Float.NaN);
    tw.setYLimitMin(Float.NaN);
    tw.setyMaxLines(yMaxLines);
    String prof = tw.printToScreen();
    System.out.println(prof);
    tw = new TrackWiggles("test_data/positive.bedGraph.gz", gc, 4);
    tw.setYLimitMax(Float.NaN);
    tw.setYLimitMin(Float.NaN);
    tw.setyMaxLines(5);
    prof = tw.printToScreen();
    System.out.println(prof);
    tw = new TrackWiggles("test_data/negative.bedGraph.gz", gc, 4);
    tw.setYLimitMax(Float.NaN);
    tw.setYLimitMin(Float.NaN);
    tw.setyMaxLines(5);
    // prof= tw.printToScreen();
    System.out.println(prof);
    gc = new GenomicCoords("chr1:1-52", 80, null, null);
    tw = new TrackWiggles("test_data/posNeg.bedGraph.gz", gc, 4);
    tw.setYLimitMax(Float.NaN);
    tw.setYLimitMin(Float.NaN);
    tw.setyMaxLines(14);
    System.out.println(tw.printToScreen());
}