Examples with LabeledCSVParser com.Ostermiller.util.LabeledCSVParser used on opensource projects

Example 76 with LabeledCSVParser

use of com.Ostermiller.util.LabeledCSVParser in project eol-globi-data by jhpoelen.

the class ParserFactoryLocalTest method parseCompressedDataSet.

@Test
public void parseCompressedDataSet() throws IOException {
    LabeledCSVParser labeledCSVParser = null;
    try {
        labeledCSVParser = new ParserFactoryLocal().createParser(StudyImporterForSimons.MISSISSIPPI_ALABAMA_DATA_SOURCE, "UTF-8");
        labeledCSVParser.getLine();
        assertFirstLine(labeledCSVParser);
        labeledCSVParser.getLine();
        assertSecondLine(labeledCSVParser);
    } finally {
        if (null != labeledCSVParser) {
            labeledCSVParser.close();
        }
    }
}

Example 77 with LabeledCSVParser

use of com.Ostermiller.util.LabeledCSVParser in project eol-globi-data by jhpoelen.

the class StudyImporterFelderTest method convertToTSVWithHeader.

@Test
public void convertToTSVWithHeader() throws IOException {
    File felder = File.createTempFile("felder", ".tsv");
    felder.deleteOnExit();
    OutputStream os = new FileOutputStream(felder);
    IOUtils.write(HEADER + "\n", os);
    IOUtils.copy(convertToTSV(getClass().getResourceAsStream("felder/BIRDS.BDT")), os);
    LabeledCSVParser parser = CSVTSVUtil.createLabeledCSVParser(new FileInputStream(felder));
    parser.changeDelimiter('\t');
    assertThat(parser.getLabels(), is(FIELDS));
    assertThat(parser.getLine(), is(notNullValue()));
    assertThat(parser.getValueByLabel("Author"), is("*Dawson, W. L."));
    assertThat(parser.getValueByLabel("species"), is("_fulicarius_"));
}

Example 78 with LabeledCSVParser

use of com.Ostermiller.util.LabeledCSVParser in project eol-globi-data by jhpoelen.

the class LengthParserImplTest method parseNoLengthUnavailable.

@Test
public void parseNoLengthUnavailable() throws IOException, StudyImporterException {
    LengthParserImpl parser = new LengthParserImpl("bla");
    LabeledCSVParser csvParser = initParser();
    assertNull(parser.parseLengthInMm(csvParser));
}

Example 79 with LabeledCSVParser

use of com.Ostermiller.util.LabeledCSVParser in project eol-globi-data by jhpoelen.

the class LengthParserImplTest method parseLengthMalformed.

@Test(expected = StudyImporterException.class)
public void parseLengthMalformed() throws IOException, StudyImporterException {
    LengthParserImpl parser = new LengthParserImpl("johnny");
    LabeledCSVParser csvParser = new TestParserFactory("johnny\nAINTRIGHT\n324\n").createParser("aStudy", "UTF-8");
    csvParser.getLine();
    parser.parseLengthInMm(csvParser);
}

Example 80 with LabeledCSVParser

use of com.Ostermiller.util.LabeledCSVParser in project eol-globi-data by jhpoelen.

the class LengthParserImplTest method parse.

@Test
public void parse() throws IOException, StudyImporterException {
    LengthParserImpl parser = new LengthParserImpl("johnny");
    LabeledCSVParser csvParser = initParser();
    assertEquals(123.0d, parser.parseLengthInMm(csvParser));
}