Examples with Pair com.b2international.commons.Pair used on opensource projects

Example 6 with Pair

use of com.b2international.commons.Pair in project snow-owl by b2ihealthcare.

the class SnomedExportApiTest method exportPublishedAndUnpublishedTextDef.

@Test
public void exportPublishedAndUnpublishedTextDef() throws Exception {
    final String codeSystemShortName = "SNOMEDCT-PUB-UNPUB-TEXTDEF";
    createCodeSystem(branchPath, codeSystemShortName).statusCode(201);
    // create new concept
    final String conceptId = createNewConcept(branchPath, ROOT_CONCEPT);
    // create new text definition
    final String textDefinitionId = createNewDescription(branchPath, conceptId, Concepts.TEXT_DEFINITION, UK_ACCEPTABLE_MAP);
    // version new concept
    final String versionEffectiveTime = "20170301";
    createVersion(codeSystemShortName, "v1", EffectiveTimes.parse(versionEffectiveTime, DateFormats.SHORT)).statusCode(201);
    // create new text definition
    final String unpublishedTextDefinitionId = createNewDescription(branchPath, conceptId, Concepts.TEXT_DEFINITION, UK_ACCEPTABLE_MAP);
    // do not create new version
    final Map<String, Object> config = ImmutableMap.<String, Object>builder().put("type", Rf2ReleaseType.DELTA.name()).put("startEffectiveTime", versionEffectiveTime).put("endEffectiveTime", versionEffectiveTime).put("includeUnpublished", true).build();
    final File exportArchive = doExport(branchPath, config);
    String textDefinitionLine = getComponentLine(List.<String>of(textDefinitionId, versionEffectiveTime, "1", MODULE_SCT_CORE, conceptId, "en", Concepts.TEXT_DEFINITION, "Description term", Concepts.ONLY_INITIAL_CHARACTER_CASE_INSENSITIVE));
    String unpublishedTextDefinitionLine = getComponentLine(List.<String>of(unpublishedTextDefinitionId, "", "1", MODULE_SCT_CORE, conceptId, "en", Concepts.TEXT_DEFINITION, "Description term", Concepts.ONLY_INITIAL_CHARACTER_CASE_INSENSITIVE));
    final Multimap<String, Pair<Boolean, String>> fileToLinesMap = ArrayListMultimap.<String, Pair<Boolean, String>>create();
    fileToLinesMap.put("sct2_Description", Pair.of(false, textDefinitionLine));
    fileToLinesMap.put("sct2_Description", Pair.of(false, unpublishedTextDefinitionLine));
    fileToLinesMap.put("sct2_TextDefinition", Pair.of(true, textDefinitionLine));
    fileToLinesMap.put("sct2_TextDefinition", Pair.of(true, unpublishedTextDefinitionLine));
    assertArchiveContainsLines(exportArchive, fileToLinesMap);
}

Example 7 with Pair

use of com.b2international.commons.Pair in project snow-owl by b2ihealthcare.

the class SnomedExportApiTest method exportLangRefset_acceptabilityChangesOnly.

@Test
public void exportLangRefset_acceptabilityChangesOnly() throws Exception {
    final String codeSystemShortName = "SNOMEDCT-EXPORT-UNPUBLISHED-LANG-REFSET-MEMBERS";
    createCodeSystem(branchPath, codeSystemShortName).statusCode(201);
    // create new concept
    final String conceptId = createNewConcept(branchPath);
    Map<String, Acceptability> acceptabilityMap = ImmutableMap.<String, Acceptability>builder().put(Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED).put(Concepts.REFSET_LANGUAGE_TYPE_US, Acceptability.ACCEPTABLE).build();
    final String descriptionId = createNewDescription(branchPath, conceptId, Concepts.SYNONYM, acceptabilityMap, "en");
    // version new concept
    final String versionEffectiveTime = "20170801";
    createVersion(codeSystemShortName, "v1", EffectiveTimes.parse(versionEffectiveTime, DateFormats.SHORT)).statusCode(201);
    SnomedReferenceSetMembers versionedMembers = getComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionId, "members()").statusCode(200).extract().as(SnomedDescription.class).getMembers();
    assertEquals(2, versionedMembers.getTotal());
    versionedMembers.forEach(m -> assertEquals(EffectiveTimes.parse(versionEffectiveTime, DateFormats.SHORT), m.getEffectiveTime()));
    Map<String, Acceptability> updatedAcceptabilityMap = ImmutableMap.<String, Acceptability>builder().put(Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.ACCEPTABLE).put(Concepts.REFSET_LANGUAGE_TYPE_US, Acceptability.PREFERRED).build();
    Map<?, ?> requestBody = ImmutableMap.builder().put("acceptability", updatedAcceptabilityMap).put("commitComment", "Updated description acceptability").build();
    updateComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionId, requestBody).statusCode(204);
    SnomedReferenceSetMembers unpublishedMembers = getComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionId, "members()").statusCode(200).extract().as(SnomedDescription.class).getMembers();
    assertEquals(2, unpublishedMembers.getTotal());
    unpublishedMembers.forEach(m -> assertNull(m.getEffectiveTime()));
    // do not create new version
    final Map<String, Object> config = ImmutableMap.<String, Object>builder().put("type", Rf2ReleaseType.DELTA.name()).put("includeUnpublished", true).build();
    final File exportArchive = doExport(branchPath, config);
    String englishDescriptionLine = createDescriptionLine(descriptionId, versionEffectiveTime, conceptId, "en", Concepts.SYNONYM, DEFAULT_TERM);
    String ukMember = createLanguageRefsetMemberLine(branchPath, descriptionId, "", Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.ACCEPTABLE.getConceptId());
    String usMember = createLanguageRefsetMemberLine(branchPath, descriptionId, "", Concepts.REFSET_LANGUAGE_TYPE_US, Acceptability.PREFERRED.getConceptId());
    final Multimap<String, Pair<Boolean, String>> fileToLinesMap = ArrayListMultimap.<String, Pair<Boolean, String>>create();
    fileToLinesMap.put("sct2_Description_Delta-en", Pair.of(false, englishDescriptionLine));
    fileToLinesMap.put("der2_cRefset_LanguageDelta-en", Pair.of(true, ukMember));
    fileToLinesMap.put("der2_cRefset_LanguageDelta-en", Pair.of(true, usMember));
    assertArchiveContainsLines(exportArchive, fileToLinesMap);
}

Example 8 with Pair

use of com.b2international.commons.Pair in project snow-owl by b2ihealthcare.

the class SnomedExportApiTest method exportLangRefset_acceptabilityAndDescChanges.

@Test
public void exportLangRefset_acceptabilityAndDescChanges() throws Exception {
    final String codeSystemShortName = "SNOMEDCT-ACCEPTABILITY-CHANGES";
    createCodeSystem(branchPath, codeSystemShortName).statusCode(201);
    // create new concept
    final String conceptId = createNewConcept(branchPath);
    final String descriptionIdA = createNewDescription(branchPath, conceptId, Concepts.SYNONYM, UK_ACCEPTABLE_MAP, "en");
    final String descriptionIdB = createNewDescription(branchPath, conceptId, Concepts.SYNONYM, UK_ACCEPTABLE_MAP, "da");
    final String descriptionIdC = createNewDescription(branchPath, conceptId, Concepts.SYNONYM, UK_ACCEPTABLE_MAP, "en");
    final String descriptionIdD = createNewDescription(branchPath, conceptId, Concepts.SYNONYM, UK_ACCEPTABLE_MAP, "da");
    final String descriptionIdE = createNewDescription(branchPath, conceptId, Concepts.SYNONYM, UK_PREFERRED_MAP, "en");
    final String descriptionIdF = createNewDescription(branchPath, conceptId, Concepts.SYNONYM, UK_PREFERRED_MAP, "da");
    // version new concept
    final String versionEffectiveTime = "20170801";
    createVersion(codeSystemShortName, "v1", EffectiveTimes.parse(versionEffectiveTime, DateFormats.SHORT)).statusCode(201);
    Map<?, ?> caseSignificanceChangeRequestBody = ImmutableMap.builder().put("caseSignificance", Concepts.ENTIRE_TERM_CASE_SENSITIVE).put("commitComment", "Updated description case significance").build();
    Map<?, ?> acceptabilityChangeRequestBody = ImmutableMap.builder().put("acceptability", UK_PREFERRED_MAP).put("commitComment", "Updated description acceptability").build();
    // Update description A
    updateComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionIdA, caseSignificanceChangeRequestBody).statusCode(204);
    // Update language refset member of description A
    updateComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionIdA, acceptabilityChangeRequestBody).statusCode(204);
    // Update description B
    updateComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionIdB, caseSignificanceChangeRequestBody).statusCode(204);
    // Update language refset member of description B
    updateComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionIdB, acceptabilityChangeRequestBody).statusCode(204);
    // Update language refset member of description C
    updateComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionIdC, acceptabilityChangeRequestBody).statusCode(204);
    // Update language refset member of description D
    updateComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionIdD, acceptabilityChangeRequestBody).statusCode(204);
    // Update description E
    updateComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionIdE, caseSignificanceChangeRequestBody).statusCode(204);
    // Update description F
    updateComponent(branchPath, SnomedComponentType.DESCRIPTION, descriptionIdF, caseSignificanceChangeRequestBody).statusCode(204);
    // export delta rf2
    final Map<String, Object> config = ImmutableMap.<String, Object>builder().put("type", Rf2ReleaseType.DELTA.name()).put("startEffectiveTime", versionEffectiveTime).put("endEffectiveTime", versionEffectiveTime).put("includeUnpublished", true).build();
    final File exportArchive = doExport(branchPath, config);
    String descriptionLineA = createDescriptionLine(descriptionIdA, "", conceptId, "en", Concepts.SYNONYM, DEFAULT_TERM, Concepts.ENTIRE_TERM_CASE_SENSITIVE);
    String descriptionLineB = createDescriptionLine(descriptionIdB, "", conceptId, "da", Concepts.SYNONYM, DEFAULT_TERM, Concepts.ENTIRE_TERM_CASE_SENSITIVE);
    String descriptionLineC = createDescriptionLine(descriptionIdC, versionEffectiveTime, conceptId, "en", Concepts.SYNONYM, DEFAULT_TERM);
    String descriptionLineD = createDescriptionLine(descriptionIdD, versionEffectiveTime, conceptId, "da", Concepts.SYNONYM, DEFAULT_TERM);
    String descriptionLineE = createDescriptionLine(descriptionIdE, "", conceptId, "en", Concepts.SYNONYM, DEFAULT_TERM, Concepts.ENTIRE_TERM_CASE_SENSITIVE);
    String descriptionLineF = createDescriptionLine(descriptionIdF, "", conceptId, "da", Concepts.SYNONYM, DEFAULT_TERM, Concepts.ENTIRE_TERM_CASE_SENSITIVE);
    String languageMemberLineA = createLanguageRefsetMemberLine(branchPath, descriptionIdA, "", Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED.getConceptId());
    String languageMemberLineB = createLanguageRefsetMemberLine(branchPath, descriptionIdB, "", Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED.getConceptId());
    String languageMemberLineC = createLanguageRefsetMemberLine(branchPath, descriptionIdC, "", Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED.getConceptId());
    String languageMemberLineD = createLanguageRefsetMemberLine(branchPath, descriptionIdD, "", Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED.getConceptId());
    String languageMemberLineE = createLanguageRefsetMemberLine(branchPath, descriptionIdE, versionEffectiveTime, Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED.getConceptId());
    String languageMemberLineF = createLanguageRefsetMemberLine(branchPath, descriptionIdF, versionEffectiveTime, Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED.getConceptId());
    final Multimap<String, Pair<Boolean, String>> fileToLinesMap = ArrayListMultimap.create();
    fileToLinesMap.put("sct2_Description_Delta-en", Pair.of(true, descriptionLineA));
    fileToLinesMap.put("sct2_Description_Delta-en", Pair.of(true, descriptionLineE));
    fileToLinesMap.put("sct2_Description_Delta-en", Pair.of(true, descriptionLineC));
    fileToLinesMap.put("sct2_Description_Delta-da", Pair.of(true, descriptionLineB));
    fileToLinesMap.put("sct2_Description_Delta-da", Pair.of(true, descriptionLineF));
    fileToLinesMap.put("sct2_Description_Delta-da", Pair.of(true, descriptionLineD));
    fileToLinesMap.put("der2_cRefset_LanguageDelta-en", Pair.of(true, languageMemberLineA));
    fileToLinesMap.put("der2_cRefset_LanguageDelta-en", Pair.of(true, languageMemberLineC));
    fileToLinesMap.put("der2_cRefset_LanguageDelta-en", Pair.of(true, languageMemberLineE));
    fileToLinesMap.put("der2_cRefset_LanguageDelta-da", Pair.of(true, languageMemberLineB));
    fileToLinesMap.put("der2_cRefset_LanguageDelta-da", Pair.of(true, languageMemberLineD));
    fileToLinesMap.put("der2_cRefset_LanguageDelta-da", Pair.of(true, languageMemberLineF));
    assertArchiveContainsLines(exportArchive, fileToLinesMap);
}

Example 9 with Pair

use of com.b2international.commons.Pair in project snow-owl by b2ihealthcare.

the class SnomedExportApiTest method exportSnapshotWithBranchPoint.

@Test
public void exportSnapshotWithBranchPoint() throws Exception {
    final String codeSystemId = "SNOMEDCT-snapshot-with-branch-at";
    createCodeSystem(branchPath, codeSystemId).statusCode(201);
    final CommitResult commitResult = SnomedRequests.prepareCommit().setBody(SnomedRequests.prepareNewRelationship().setId(new NamespaceIdStrategy("")).setActive(true).setCharacteristicTypeId(Concepts.INFERRED_RELATIONSHIP).setDestinationId(Concepts.ROOT_CONCEPT).setModifierId(Concepts.EXISTENTIAL_RESTRICTION_MODIFIER).setModuleId(Concepts.MODULE_SCT_CORE).setRelationshipGroup(0).setSourceId(Concepts.ACCEPTABILITY).setTypeId(Concepts.IS_A).setUnionGroup(0)).setCommitComment("Created new relationship").setAuthor(RestExtensions.USER).build(ResourceURI.of(CodeSystem.RESOURCE_TYPE, codeSystemId)).execute(getBus()).getSync(1L, TimeUnit.MINUTES);
    final long timestamp = commitResult.getCommitTimestamp() - 1L;
    final String relationshipId = commitResult.getResultAs(String.class);
    // id, effectiveTime, active, moduleId, sourceId, destinationId, relationshipGroup, typeId, characteristicTypeId, modifierId
    final String relationshipLine = getComponentLine(List.of(relationshipId, "", "1", Concepts.MODULE_SCT_CORE, Concepts.ACCEPTABILITY, Concepts.ROOT_CONCEPT, "0", Concepts.IS_A, Concepts.INFERRED_RELATIONSHIP, Concepts.EXISTENTIAL_RESTRICTION_MODIFIER));
    final Map<String, Object> config = Map.of("type", Rf2ReleaseType.SNAPSHOT.name(), "includeUnpublished", true);
    final File exportArchive = doExport(codeSystemId, config);
    final String relationshipFileName = "sct2_Relationship_Snapshot";
    final Multimap<String, Pair<Boolean, String>> fileToLinesMap = ArrayListMultimap.<String, Pair<Boolean, String>>create();
    fileToLinesMap.put(relationshipFileName, Pair.of(true, relationshipLine));
    assertArchiveContainsLines(exportArchive, fileToLinesMap);
    /* 
		 * A snapshot export with a timestamp set before creating the relationship should result in the relationship
		 * not appearing in the export file.
		 */
    final File exportArchiveWithTimestamp = doExport(codeSystemId + "@" + timestamp, config);
    fileToLinesMap.clear();
    fileToLinesMap.put(relationshipFileName, Pair.of(false, relationshipLine));
    assertArchiveContainsLines(exportArchiveWithTimestamp, fileToLinesMap);
}

Example 10 with Pair

use of com.b2international.commons.Pair in project snow-owl by b2ihealthcare.

the class SnomedExportApiTest method exportDeltaWithBranchRange.

@Test
public void exportDeltaWithBranchRange() throws Exception {
    final String relationshipOnParent = createNewRelationship(branchPath);
    final IBranchPath taskBranchPath = BranchPathUtils.createPath(branchPath, "task");
    branching.createBranch(taskBranchPath).statusCode(201);
    final String relationshipOnTask = createNewRelationship(taskBranchPath);
    final Map<String, Object> config = Map.of("type", Rf2ReleaseType.DELTA.name(), "includeUnpublished", true);
    // A "standard" delta export should include both unpublished lines
    final File exportArchive = doExport(taskBranchPath, config);
    final String relationshipFileName = "sct2_StatedRelationship_Delta";
    final Multimap<String, Pair<Boolean, String>> fileToLinesMap = ArrayListMultimap.<String, Pair<Boolean, String>>create();
    fileToLinesMap.put(relationshipFileName, Pair.of(true, createRelationshipLine(relationshipOnParent)));
    fileToLinesMap.put(relationshipFileName, Pair.of(true, createRelationshipLine(relationshipOnTask)));
    assertArchiveContainsLines(exportArchive, fileToLinesMap);
    // Delta export with a path range can restrict the set of visible components
    final IBranchPath branchRange = BranchPathUtils.createPath(branchPath.getPath() + RevisionIndex.REV_RANGE + taskBranchPath.getPath());
    final File exportArchiveWithBranchRange = doExport(branchRange, config);
    fileToLinesMap.clear();
    fileToLinesMap.put(relationshipFileName, Pair.of(false, createRelationshipLine(relationshipOnParent)));
    fileToLinesMap.put(relationshipFileName, Pair.of(true, createRelationshipLine(relationshipOnTask)));
    assertArchiveContainsLines(exportArchiveWithBranchRange, fileToLinesMap);
}