Examples with Revision com.b2international.index.revision.Revision used on opensource projects

Example 36 with Revision

use of com.b2international.index.revision.Revision in project snow-owl by b2ihealthcare.

the class ConceptChangeProcessorAxiomTest method deleteSubClassOfAxiom.

@Test
public void deleteSubClassOfAxiom() throws Exception {
    final SnomedConceptDocument parentConcept = concept().build();
    final SnomedConceptDocument concept = concept().statedParents(Long.parseLong(parentConcept.getId())).statedAncestors(IComponent.ROOT_IDL).build();
    SnomedRefSetMemberIndexEntry member = createOwlAxiom(concept.getId(), String.format("SubClassOf(:%s :%s)", concept.getId(), parentConcept.getId())).classAxiomRelationships(ImmutableList.of(SnomedOWLRelationshipDocument.create(Concepts.IS_A, parentConcept.getId(), 0))).build();
    indexRevision(MAIN, concept, parentConcept, member);
    statedChangedConceptIds.add(Long.parseLong(concept.getId()));
    statedChangedConceptIds.add(Long.parseLong(parentConcept.getId()));
    stageRemove(member);
    final ConceptChangeProcessor processor = process();
    assertEquals(1, processor.getChangedMappings().size());
    final SnomedConceptDocument expected = docWithDefaults(concept).statedParents(IComponent.ROOT_IDL).build();
    final Revision actual = Iterables.getOnlyElement(processor.getChangedMappings().values()).getNewRevision();
    assertDocEquals(expected, actual);
    assertEquals(0, processor.getNewMappings().size());
    assertEquals(0, processor.getDeletions().size());
}

Example 37 with Revision

use of com.b2international.index.revision.Revision in project snow-owl by b2ihealthcare.

the class ConceptIconIdUpdaterTest method indexTopLevelConceptWithKnownSemanticTag.

@Test
public void indexTopLevelConceptWithKnownSemanticTag() {
    final SnomedConceptDocument concept = concept().statedParents(IComponent.ROOT_IDL).parents(IComponent.ROOT_IDL).iconId(// intentionally unset icon ID before change processing
    null).build();
    final SnomedDescriptionIndexEntry fsn = description(concept.getId(), Concepts.FULLY_SPECIFIED_NAME, String.format(TEST_FSN, FINDING_SEMANTIC_TAG), singletonMap(Concepts.REFSET_LANGUAGE_TYPE_US, Acceptability.PREFERRED));
    stageNew(concept);
    stageNew(fsn);
    availableImages.add(FINDING_SEMANTIC_TAG);
    final ConceptChangeProcessor processor = process();
    final SnomedConceptDocument expected = docWithDefaults(concept).semanticTags(ImmutableSortedSet.of(FINDING_SEMANTIC_TAG)).preferredDescriptions(ImmutableList.of(new SnomedDescriptionFragment(fsn.getId(), fsn.getTypeId(), fsn.getTerm(), Concepts.REFSET_LANGUAGE_TYPE_US))).iconId(// icon ID must be "finding"
    FINDING_SEMANTIC_TAG).build();
    final Revision actual = Iterables.getOnlyElement(processor.getNewMappings().values());
    assertDocEquals(expected, actual);
}

Example 38 with Revision

use of com.b2international.index.revision.Revision in project snow-owl by b2ihealthcare.

the class ConceptIconIdUpdaterTest method indexChildConceptWithGBAndExtensionFsn.

@Test
public void indexChildConceptWithGBAndExtensionFsn() {
    final SnomedConceptDocument concept = concept().iconId(// intentionally unset icon ID before change processing
    null).build();
    final SnomedDescriptionIndexEntry fsn1 = description(concept.getId(), Concepts.FULLY_SPECIFIED_NAME, String.format(TEST_FSN, FINDING_SEMANTIC_TAG), singletonMap(Concepts.REFSET_LANGUAGE_TYPE_US, Acceptability.PREFERRED));
    indexRevision(MAIN, concept, fsn1);
    final SnomedConceptDocument childConcept = concept().iconId(// intentionally unset icon ID before change processing
    null).build();
    // the GB preferred FSN has priority over the other preferred FSNs (except the US one)
    final SnomedDescriptionIndexEntry fsn2 = description(childConcept.getId(), Concepts.FULLY_SPECIFIED_NAME, String.format(TEST_FSN, DISORDER_SEMANTIC_TAG), singletonMap(Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED));
    final SnomedDescriptionIndexEntry fsn3 = description(childConcept.getId(), Concepts.FULLY_SPECIFIED_NAME, String.format(TEST_FSN, "trouble"), singletonMap(Concepts.REFSET_LANGUAGE_TYPE_SG, Acceptability.PREFERRED));
    final SnomedRefSetMemberIndexEntry member = createOwlAxiom(childConcept.getId(), String.format("SubClassOf(:%s :%s)", childConcept.getId(), concept.getId())).build();
    stageNew(childConcept);
    stageNew(fsn3);
    stageNew(fsn2);
    stageNew(member);
    statedChangedConceptIds.add(Long.parseLong(concept.getId()));
    statedChangedConceptIds.add(Long.parseLong(childConcept.getId()));
    availableImages.add(DISORDER_SEMANTIC_TAG);
    final ConceptChangeProcessor processor = process();
    final SnomedConceptDocument expectedChild = docWithDefaults(childConcept).semanticTags(// both semantic tags should be present
    ImmutableSortedSet.of(DISORDER_SEMANTIC_TAG, "trouble")).preferredDescriptions(ImmutableList.of(new SnomedDescriptionFragment(fsn2.getId(), fsn2.getTypeId(), fsn2.getTerm(), Concepts.REFSET_LANGUAGE_TYPE_UK), new SnomedDescriptionFragment(fsn3.getId(), fsn3.getTypeId(), fsn3.getTerm(), Concepts.REFSET_LANGUAGE_TYPE_SG))).iconId(// icon ID must be "disorder"
    DISORDER_SEMANTIC_TAG).statedParents(Long.parseLong(concept.getId())).statedAncestors(IComponent.ROOT_IDL).activeMemberOf(singleton(Concepts.REFSET_OWL_AXIOM)).memberOf(singleton(Concepts.REFSET_OWL_AXIOM)).build();
    final Revision actualChild = Iterables.getOnlyElement(processor.getNewMappings().values());
    assertDocEquals(expectedChild, actualChild);
}

Example 39 with Revision

use of com.b2international.index.revision.Revision in project snow-owl by b2ihealthcare.

the class DescriptionChangeProcessorTest method addNewDescriptionWithPreferredLanguageMember.

@Test
public void addNewDescriptionWithPreferredLanguageMember() throws Exception {
    SnomedDescriptionIndexEntry fsn = fsn(generateConceptId(), Collections.emptyMap());
    SnomedRefSetMemberIndexEntry preferredInUk = langMember(fsn.getId(), Acceptability.PREFERRED, Concepts.REFSET_LANGUAGE_TYPE_UK);
    stageNew(fsn);
    stageNew(preferredInUk);
    process(processor);
    final SnomedDescriptionIndexEntry expectedDoc = SnomedDescriptionIndexEntry.builder(fsn).memberOf(ImmutableList.of(Concepts.REFSET_LANGUAGE_TYPE_UK)).activeMemberOf(ImmutableList.of(Concepts.REFSET_LANGUAGE_TYPE_UK)).acceptability(Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED).build();
    final Revision currentDoc = Iterables.getOnlyElement(processor.getNewMappings().values());
    assertDocEquals(expectedDoc, currentDoc);
    assertEquals(0, processor.getChangedMappings().size());
    assertEquals(0, processor.getDeletions().size());
}

Example 40 with Revision

use of com.b2international.index.revision.Revision in project snow-owl by b2ihealthcare.

the class DescriptionChangeProcessorTest method addNewDescriptionWithAcceptableLanguageMember.

@Test
public void addNewDescriptionWithAcceptableLanguageMember() throws Exception {
    SnomedDescriptionIndexEntry fsn = fsn(generateConceptId(), Collections.emptyMap());
    SnomedRefSetMemberIndexEntry acceptableInUk = langMember(fsn.getId(), Acceptability.ACCEPTABLE, Concepts.REFSET_LANGUAGE_TYPE_UK);
    stageNew(fsn);
    stageNew(acceptableInUk);
    process(processor);
    final SnomedDescriptionIndexEntry expectedDoc = SnomedDescriptionIndexEntry.builder(fsn).memberOf(// TODO fix me
    ImmutableList.of(Concepts.REFSET_LANGUAGE_TYPE_UK)).activeMemberOf(ImmutableList.of(Concepts.REFSET_LANGUAGE_TYPE_UK)).acceptability(Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.ACCEPTABLE).build();
    final Revision currentDoc = Iterables.getOnlyElement(processor.getNewMappings().values());
    assertDocEquals(expectedDoc, currentDoc);
    assertEquals(0, processor.getChangedMappings().size());
    assertEquals(0, processor.getDeletions().size());
}