Examples with ResourceURI com.b2international.snowowl.core.ResourceURI used on opensource projects

Example 6 with ResourceURI

use of com.b2international.snowowl.core.ResourceURI in project snow-owl by b2ihealthcare.

the class SnomedExtensionUpgradeTest method upgrade24UpgradeWithEmptyExtension.

@Test
public void upgrade24UpgradeWithEmptyExtension() throws Exception {
    // new SI concept
    ResourceURI base = CodeSystem.uri(SNOMEDCT);
    createConcept(base, createConceptRequestBody(Concepts.ROOT_CONCEPT, Concepts.MODULE_SCT_CORE));
    // create a new INT version
    LocalDate effectiveDate1 = getNextAvailableEffectiveDate(SNOMEDCT);
    createVersion(SNOMEDCT, effectiveDate1).statusCode(201);
    ResourceURI upgradeVersion1 = base.withPath(effectiveDate1.toString());
    // new SI concept
    String conceptId = createConcept(base, createConceptRequestBody(Concepts.ROOT_CONCEPT, Concepts.MODULE_SCT_CORE));
    // create a new INT version
    LocalDate effectiveDate2 = getNextAvailableEffectiveDate(SNOMEDCT);
    createVersion(SNOMEDCT, effectiveDate2).statusCode(201);
    ResourceURI upgradeVersion2 = base.withPath(effectiveDate2.toString());
    // new SI concept
    createConcept(base, createConceptRequestBody(Concepts.ROOT_CONCEPT, Concepts.MODULE_SCT_CORE));
    // create a new INT version
    LocalDate effectiveDate3 = getNextAvailableEffectiveDate(SNOMEDCT);
    createVersion(SNOMEDCT, effectiveDate3).statusCode(201);
    ResourceURI upgradeVersion3 = base.withPath(effectiveDate3.toString());
    // create extension on the latest SI VERSION
    CodeSystem extension = createExtension(upgradeVersion1, branchPath.lastSegment());
    // start upgrade to the new available upgrade version
    CodeSystem upgradeCodeSystem = createExtensionUpgrade(extension.getResourceURI(), upgradeVersion2);
    assertState(upgradeCodeSystem.getBranchPath(), extension.getBranchPath(), BranchState.FORWARD);
    Boolean result = CodeSystemRequests.prepareUpgradeSynchronization(upgradeCodeSystem.getResourceURI(), extension.getResourceURI()).buildAsync().execute(getBus()).getSync(1, TimeUnit.MINUTES);
    assertTrue(result);
    assertState(upgradeCodeSystem.getBranchPath(), extension.getBranchPath(), BranchState.FORWARD);
    Boolean successComplete = CodeSystemRequests.prepareComplete(upgradeCodeSystem.getId()).buildAsync().execute(getBus()).getSync(1, TimeUnit.MINUTES);
    assertTrue(successComplete);
    getComponent(extension.getResourceURI(), SnomedComponentType.CONCEPT, conceptId).statusCode(200);
}

Example 7 with ResourceURI

use of com.b2international.snowowl.core.ResourceURI in project snow-owl by b2ihealthcare.

the class SnomedExtensionUpgradeTest method upgrade23UpgradeSychronizeVersion.

@Test
public void upgrade23UpgradeSychronizeVersion() throws Exception {
    // create extension on the latest SI VERSION
    CodeSystem extension = createExtension(latestInternationalVersion, branchPath.lastSegment());
    // new SI concept
    createConcept(SnomedContentRule.SNOMEDCT, createConceptRequestBody(Concepts.ROOT_CONCEPT, Concepts.MODULE_SCT_CORE));
    // create a new INT version
    LocalDate effectiveDate = getNextAvailableEffectiveDate(SNOMEDCT);
    createVersion(SNOMEDCT, effectiveDate).statusCode(201);
    ResourceURI upgradeVersion = CodeSystem.uri(SNOMEDCT, effectiveDate.toString());
    // new SE concept
    String extensionModuleId = createModule(extension);
    createConcept(extension.getResourceURI(), createConceptRequestBody(Concepts.ROOT_CONCEPT, extensionModuleId));
    // version extension
    LocalDate effectiveDate2 = LocalDate.now();
    createVersion(extension.getId(), effectiveDate2).statusCode(201);
    ResourceURI extensionVersion = CodeSystem.uri(extension.getId(), effectiveDate2.toString());
    // new SE concept
    createConcept(extension.getResourceURI(), createConceptRequestBody(Concepts.ROOT_CONCEPT, extensionModuleId));
    // version extension
    LocalDate effectiveDate3 = getNextAvailableEffectiveDate(extension.getId());
    createVersion(extension.getId(), effectiveDate3).statusCode(201);
    ResourceURI extensionVersion2 = CodeSystem.uri(extension.getId(), effectiveDate3.toString());
    // new SE concept
    createConcept(extension.getResourceURI(), createConceptRequestBody(Concepts.ROOT_CONCEPT, extensionModuleId));
    // version extension
    LocalDate effectiveDate4 = getNextAvailableEffectiveDate(extension.getId());
    createVersion(extension.getId(), effectiveDate4).statusCode(201);
    ResourceURI extensionVersion3 = CodeSystem.uri(extension.getId(), effectiveDate4.toString());
    // start upgrade to the new available upgrade version
    CodeSystem upgradeCodeSystem = createExtensionUpgrade(extensionVersion, upgradeVersion);
    CodeSystems expandedCodeSystems = CodeSystemRestRequests.search(upgradeCodeSystem.getId(), CodeSystem.Expand.UPGRADE_INFO + "()");
    assertEquals(upgradeVersion, upgradeCodeSystem.getExtensionOf());
    assertThat(expandedCodeSystems.first().get().getUpgradeInfo().getAvailableVersions()).doesNotContainSequence(extensionVersion);
    assertThat(expandedCodeSystems.first().get().getUpgradeInfo().getAvailableVersions()).contains(extensionVersion2);
    Boolean result = CodeSystemRequests.prepareUpgradeSynchronization(upgradeCodeSystem.getResourceURI(), extensionVersion2).buildAsync().execute(getBus()).getSync(1, TimeUnit.MINUTES);
    assertTrue(result);
    CodeSystems expandedCodeSystemsAfterMerge = CodeSystemRestRequests.search(upgradeCodeSystem.getId(), CodeSystem.Expand.UPGRADE_INFO + "()");
    assertThat(expandedCodeSystemsAfterMerge.first().get().getUpgradeInfo().getAvailableVersions()).containsOnly(extensionVersion3);
}

Example 8 with ResourceURI

use of com.b2international.snowowl.core.ResourceURI in project snow-owl by b2ihealthcare.

the class SnomedComponentEffectiveTimeRestoreTest method restoreExtensionEffectiveTimeOnExtensionVersionUpgrade.

@Test
public void restoreExtensionEffectiveTimeOnExtensionVersionUpgrade() throws Exception {
    final String codeSystemId = branchPath.lastSegment();
    // create extension on the base SI VERSION
    final CodeSystem extension = createExtension(baseInternationalCodeSystem, codeSystemId);
    // create the module concept to represent the extension
    String moduleId = createModule(extension);
    // create an extension version, concept receives effective time
    LocalDate effectiveTime = getNextAvailableEffectiveDate(codeSystemId);
    createVersion(codeSystemId, effectiveTime).statusCode(201);
    ResourceURI upgradeExtVersion = CodeSystem.uri(codeSystemId, effectiveTime.toString());
    SnomedConcept concept = getConcept(extension.getResourceURI(), moduleId);
    assertEquals(effectiveTime, concept.getEffectiveTime());
    // Update extension concept
    updateConcept(extension.getResourceURI(), concept.getId(), Map.of("moduleId", Concepts.MODULE_SCT_MODEL_COMPONENT));
    // Create second version
    LocalDate effectiveDate2 = getNextAvailableEffectiveDate(codeSystemId);
    createVersion(codeSystemId, effectiveDate2).statusCode(201);
    // start the extension upgrade process
    CodeSystem upgradeCodeSystem = createExtensionUpgrade(upgradeExtVersion, upgradeInternationalCodeSystem);
    // create a change on the concept, like change the definition status
    updateConcept(upgradeCodeSystem.getResourceURI(), concept.getId(), Map.of("definitionStatusId", Concepts.FULLY_DEFINED));
    concept = getConcept(upgradeCodeSystem.getResourceURI(), moduleId);
    assertEquals(null, concept.getEffectiveTime());
    // revert the change, so it reverts the effective time to the 'effectiveDate' effective time
    updateConcept(upgradeCodeSystem.getResourceURI(), moduleId, Map.of("definitionStatusId", Concepts.PRIMITIVE));
    concept = getConcept(upgradeCodeSystem.getResourceURI(), moduleId);
    assertEquals(effectiveTime, concept.getEffectiveTime());
}

Example 9 with ResourceURI

use of com.b2international.snowowl.core.ResourceURI in project snow-owl by b2ihealthcare.

the class SnomedExtensionUpgradeTest method upgrade22UpgradeSychronizeHead.

@Test
public void upgrade22UpgradeSychronizeHead() throws Exception {
    // create extension on the latest SI VERSION
    CodeSystem extension = createExtension(latestInternationalVersion, branchPath.lastSegment());
    // new SI concept
    createConcept(SnomedContentRule.SNOMEDCT, createConceptRequestBody(Concepts.ROOT_CONCEPT, Concepts.MODULE_SCT_CORE));
    // create a new INT version
    LocalDate effectiveDate = getNextAvailableEffectiveDate(SNOMEDCT);
    createVersion(SNOMEDCT, effectiveDate).statusCode(201);
    ResourceURI upgradeVersion = CodeSystem.uri(SNOMEDCT, effectiveDate.toString());
    // new SE concept
    String extensionModuleId = createModule(extension);
    createConcept(extension.getResourceURI(), createConceptRequestBody(Concepts.ROOT_CONCEPT, extensionModuleId));
    // version extension
    LocalDate effectiveDate2 = LocalDate.now();
    createVersion(extension.getId(), effectiveDate2).statusCode(201);
    ResourceURI extensionVersion = CodeSystem.uri(extension.getId(), effectiveDate2.toString());
    // new SE concept
    createConcept(extension.getResourceURI(), createConceptRequestBody(Concepts.ROOT_CONCEPT, extensionModuleId));
    // version extension
    LocalDate effectiveDate3 = getNextAvailableEffectiveDate(extension.getId());
    createVersion(extension.getId(), effectiveDate3).statusCode(201);
    ResourceURI extensionVersion2 = CodeSystem.uri(extension.getId(), effectiveDate3.toString());
    // start upgrade to the new available upgrade version
    CodeSystem upgradeCodeSystem = createExtensionUpgrade(extensionVersion, upgradeVersion);
    CodeSystems expandedCodeSystems = CodeSystemRestRequests.search(upgradeCodeSystem.getId(), CodeSystem.Expand.UPGRADE_INFO + "()");
    assertEquals(upgradeVersion, upgradeCodeSystem.getExtensionOf());
    assertThat(expandedCodeSystems.first().get().getUpgradeInfo().getAvailableVersions()).doesNotContainSequence(extensionVersion);
    assertThat(expandedCodeSystems.first().get().getUpgradeInfo().getAvailableVersions()).contains(extensionVersion2);
    IBranchPath extensionBranch = BranchPathUtils.createPath(extension.getBranchPath());
    IBranchPath upgradeBranch = BranchPathUtils.createPath(upgradeCodeSystem.getBranchPath());
    merge(extensionBranch, upgradeBranch, "Merged new concept from child branch").body("status", equalTo(Merge.Status.COMPLETED.name()));
    Boolean result = CodeSystemRequests.prepareUpgradeSynchronization(upgradeCodeSystem.getResourceURI(), extension.getResourceURI()).buildAsync().execute(getBus()).getSync(1, TimeUnit.MINUTES);
    assertTrue(result);
    CodeSystems expandedCodeSystemsAfterMerge = CodeSystemRestRequests.search(upgradeCodeSystem.getId(), CodeSystem.Expand.UPGRADE_INFO + "()");
    assertThat(expandedCodeSystemsAfterMerge.first().get().getUpgradeInfo().getAvailableVersions()).isEmpty();
}

Example 10 with ResourceURI

use of com.b2international.snowowl.core.ResourceURI in project snow-owl by b2ihealthcare.

the class SnomedExtensionUpgradeTest method upgrade13SemanticallySameChangesAppliedTwiceBeforeUpgradeAndAfterUpgrade.

@Test
public void upgrade13SemanticallySameChangesAppliedTwiceBeforeUpgradeAndAfterUpgrade() throws Exception {
    // create extension on the latest SI VERSION
    CodeSystem extension = createExtension(latestInternationalVersion, branchPath.lastSegment());
    // create new extension version with one new concept and one member on INT concept
    String moduleId = createModule(extension);
    SnomedConcept concept = searchConcepts(baseInternationalCodeSystem, Map.of("module", Concepts.MODULE_SCT_CORE, "expand", "descriptions()"), 1).stream().findFirst().get();
    String descriptionId = concept.getDescriptions().stream().findFirst().get().getId();
    // create new inactivation indicator for one of the description, pending move
    createMember(extension.getResourceURI(), Map.of("moduleId", moduleId, "refsetId", Concepts.REFSET_DESCRIPTION_INACTIVITY_INDICATOR, "referencedComponentId", descriptionId, "valueId", Concepts.PENDING_MOVE));
    // version extension
    createVersion(extension.getId(), "v1", LocalDate.now()).statusCode(201);
    // add another member on INT representing a change in INT and allow extension to upgrade
    createMember(SnomedContentRule.SNOMEDCT, Map.of("moduleId", Concepts.MODULE_SCT_CORE, "refsetId", Concepts.REFSET_DESCRIPTION_INACTIVITY_INDICATOR, "referencedComponentId", descriptionId, "valueId", Concepts.PENDING_MOVE));
    LocalDate effectiveTime = getNextAvailableEffectiveDate(SNOMEDCT);
    createVersion(SNOMEDCT, effectiveTime).statusCode(201);
    ResourceURI upgradeVersion = CodeSystem.uri(SNOMEDCT, effectiveTime.toString());
    // start the upgrade
    CodeSystem upgradeCodeSystem = createExtensionUpgrade(extension.getResourceURI(), upgradeVersion);
    // add another extension member to the same int concept with same meaning to the original extension branch
    createMember(extension.getResourceURI(), Map.of("moduleId", moduleId, "refsetId", Concepts.REFSET_DESCRIPTION_INACTIVITY_INDICATOR, "referencedComponentId", descriptionId, "valueId", Concepts.AMBIGUOUS));
    // synchronize upgrade
    final String mergeLocation = createMerge(extension.getBranchPath(), upgradeCodeSystem.getBranchPath(), "Sync Upgrade CodeSystem", false).statusCode(202).extract().header("Location");
    waitForMergeJob(lastPathSegment(mergeLocation));
    // each component should have a single revision after successful sync
    getConcept(upgradeCodeSystem.getResourceURI(), concept.getId());
}