Examples with RemoteLocationsApi com.hartwig.batch.api.RemoteLocationsApi used on opensource projects

Example 11 with RemoteLocationsApi

use of com.hartwig.batch.api.RemoteLocationsApi in project pipeline5 by hartwigmedical.

the class PurpleRerun method execute.

@Override
public VirtualMachineJobDefinition execute(final InputBundle inputs, final RuntimeBucket runtimeBucket, final BashStartupScript commands, final RuntimeFiles executionFlags) {
    final InputFileDescriptor biopsy = inputs.get("biopsy");
    final RemoteLocationsApi storageLocations = new RemoteLocationsApi(biopsy);
    commands.addCommands(bashCommands(storageLocations));
    commands.addCommand(new OutputUpload(GoogleStorageLocation.of(runtimeBucket.name(), "purple"), executionFlags));
    return VirtualMachineJobDefinition.purple(commands, ResultsDirectory.defaultDirectory());
}