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Example 6 with AmberBAF

use of com.hartwig.hmftools.common.amber.AmberBAF in project hmftools by hartwigmedical.

the class BAFFactoryTest method testInvalidBAF.

@Test
public void testInvalidBAF() {
    final Pileup tumor = PileupFile.fromString("seq2\t156\tA\t10\tCCCCCCCCCC\t*");
    final List<AmberBAF> result = VICTIM.create(Collections.singletonList(GOOD_NORMAL), Collections.singletonList(tumor));
    assertEquals(0, result.size());
}
Also used : Pileup(com.hartwig.hmftools.common.pileup.Pileup) AmberBAF(com.hartwig.hmftools.common.amber.AmberBAF) Test(org.junit.Test)

Aggregations

AmberBAF (com.hartwig.hmftools.common.amber.AmberBAF)6 Pileup (com.hartwig.hmftools.common.pileup.Pileup)5 Test (org.junit.Test)4 NotNull (org.jetbrains.annotations.NotNull)2 ImmutableAmberBAF (com.hartwig.hmftools.common.amber.ImmutableAmberBAF)1 CobaltRatio (com.hartwig.hmftools.common.cobalt.CobaltRatio)1 GCProfile (com.hartwig.hmftools.common.gc.GCProfile)1 PurpleSegment (com.hartwig.hmftools.common.purple.segment.PurpleSegment)1