Examples with GCProfile com.hartwig.hmftools.common.gc.GCProfile used on opensource projects

Example 6 with GCProfile

use of com.hartwig.hmftools.common.gc.GCProfile in project hmftools by hartwigmedical.

the class GCAccumulatorTest method testExcludeOverlapAtStart.

@Test
public void testExcludeOverlapAtStart() {
    final GenomeRegion region = GenomeRegionFactory.create(CHROMOSOME, 1100, 3000);
    final GCAccumulator victim = new GCAccumulator(region);
    final GenomeRegionSelector<GCProfile> selector = selector(profile(1001, 0.90), profile(2001, 0.91));
    selector.select(region, victim);
    assertEquals(0.91, victim.averageGCContent(), EPSILON);
}