use of com.ibm.cohort.cql.evaluation.CqlEvaluator in project quality-measure-and-cohort-service by Alvearie.
the class CqlEvaluatorIntegrationTest method testConditionDateRangeCriteriaMatched.
@Test
public void testConditionDateRangeCriteriaMatched() throws Exception {
Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
DateFormat sdf = new SimpleDateFormat("yyyy-MM-dd");
Date date = sdf.parse("2000-01-01");
Condition condition = new Condition();
condition.setId("condition");
condition.setSubject(new Reference("Patient/123"));
condition.setRecordedDate(date);
// Wiremock does not support request matching withQueryParam() function does not support
// the same parameter multiple times, so we do some regex work and try to make it
// somewhat order independent while still readable.
// @see https://github.com/tomakehurst/wiremock/issues/398
MappingBuilder builder = get(urlMatching("/Condition\\?(recorded-date=[lg]e.*&){2}subject=Patient%2F123&_format=json"));
mockFhirResourceRetrieval(builder, condition);
FhirServerConfig fhirConfig = getFhirServerConfig();
CqlEvaluator evaluator = setupTestFor(patient, fhirConfig, "cql.condition", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
Map<String, Parameter> parameters = new HashMap<>();
parameters.put("MeasurementPeriod", new IntervalParameter(new DatetimeParameter("1999-01-01T00:00:00-05:00"), true, new DatetimeParameter("2000-01-01T00:00:00-05:00"), false));
String expression = "ConditionInInterval";
CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("TestDateQuery", "1.0.0"), parameters, newPatientContext("123"), Collections.singleton(expression));
Assert.assertEquals(1, actual.getExpressionResults().size());
List<Object> value = (List) actual.getExpressionResults().get(expression);
Assert.assertEquals(1, value.size());
assertFhirEquals(condition, (IBaseResource) value.get(0));
}
use of com.ibm.cohort.cql.evaluation.CqlEvaluator in project quality-measure-and-cohort-service by Alvearie.
the class CqlEvaluatorIntegrationTest method testInvalidLibraryName.
@Test(expected = IllegalArgumentException.class)
public void testInvalidLibraryName() throws Exception {
Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
CqlEvaluator evaluator = setupTestFor(patient, "cql.basic");
String expression = "Female";
evaluator.evaluate(new CqlVersionedIdentifier("NotCorrect", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
}
use of com.ibm.cohort.cql.evaluation.CqlEvaluator in project quality-measure-and-cohort-service by Alvearie.
the class CqlTemporalTests method noEventWithinFourDays.
@Test
public void noEventWithinFourDays() throws Exception {
Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
FhirServerConfig fhirConfig = getFhirServerConfig();
Observation observationIN = new Observation();
DateTimeType observationEffective = new DateTimeType(new Date());
observationEffective.setYear(2015);
observationEffective.setMonth(1);
observationEffective.setDay(15);
observationIN.setEffective(observationEffective);
Observation observationOUT = new Observation();
DateTimeType observationEffective2 = new DateTimeType(new Date());
observationEffective2.setYear(2015);
observationEffective2.setMonth(1);
observationEffective2.setDay(25);
observationOUT.setEffective(observationEffective2);
Bundle bundle = new Bundle();
Bundle.BundleEntryComponent firstEncounter = new Bundle.BundleEntryComponent();
firstEncounter.setResource(observationIN);
Bundle.BundleEntryComponent secondEncounter = new Bundle.BundleEntryComponent();
secondEncounter.setResource(observationOUT);
bundle.addEntry(firstEncounter);
bundle.addEntry(secondEncounter);
mockFhirResourceRetrieval("/Observation?subject=Patient%2F123&_format=json", getFhirParser(), bundle, fhirConfig);
mockFhirResourceRetrieval("/Condition?subject=Patient%2F123&_format=json", getFhirParser(), CONDITION_IN, fhirConfig);
CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
String expression = "ValidObservation not within 4 days";
CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test5", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
Map<String, Object> expected = new HashMap<>();
expected.put(expression, true);
Assert.assertEquals(expected, actual.getExpressionResults());
}
use of com.ibm.cohort.cql.evaluation.CqlEvaluator in project quality-measure-and-cohort-service by Alvearie.
the class CqlTemporalTests method cannotFindEncountersThatDontExist.
@Test
public void cannotFindEncountersThatDontExist() throws Exception {
Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
FhirServerConfig fhirConfig = getFhirServerConfig();
Bundle bundle = new Bundle();
Bundle.BundleEntryComponent firstEncounter = new Bundle.BundleEntryComponent();
firstEncounter.setResource(ENCOUNTER_1);
Bundle.BundleEntryComponent secondEncounter = new Bundle.BundleEntryComponent();
secondEncounter.setResource(ENCOUNTER_3);
bundle.addEntry(firstEncounter);
bundle.addEntry(secondEncounter);
mockFhirResourceRetrieval("/Encounter?subject=Patient%2F123&_format=json", getFhirParser(), bundle, fhirConfig);
CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
String expression = "ValidEncounters2";
CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test3", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
Map<String, Object> expected = new HashMap<>();
expected.put(expression, false);
Assert.assertEquals(expected, actual.getExpressionResults());
}
use of com.ibm.cohort.cql.evaluation.CqlEvaluator in project quality-measure-and-cohort-service by Alvearie.
the class CqlTemporalTests method cannotFindEventWithoutExistenceOfThirdEvent.
@Test
public void cannotFindEventWithoutExistenceOfThirdEvent() throws Exception {
Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
Observation observation = new Observation();
DateTimeType observationEffective = new DateTimeType(new Date());
observationEffective.setYear(2015);
observationEffective.setMonth(2);
observationEffective.setDay(5);
observation.setEffective(observationEffective);
FhirServerConfig fhirConfig = getFhirServerConfig();
mockFhirResourceRetrieval("/Condition?subject=Patient%2F123&_format=json", getFhirParser(), CONDITION_IN, fhirConfig);
mockFhirResourceRetrieval("/Encounter?subject=Patient%2F123&_format=json", getFhirParser(), ENCOUNTER_1, fhirConfig);
mockFhirResourceRetrieval("/Observation?subject=Patient%2F123&_format=json", getFhirParser(), observation, fhirConfig);
CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
String expression = "ObservationWithin30DaysOfCondition";
CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test2", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
Map<String, Object> expected = new HashMap<>();
expected.put(expression, false);
Assert.assertEquals(expected, actual.getExpressionResults());
}
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