use of com.ibm.cohort.engine.measure.cache.RetrieveCacheContext in project quality-measure-and-cohort-service by Alvearie.
the class CohortEngineRestHandler method evaluatePatientListMeasure.
@POST
@Path("/evaluation-patient-list")
@Consumes(MediaType.MULTIPART_FORM_DATA)
@Produces({ MediaType.APPLICATION_JSON })
@ApiOperation(value = "Evaluates a measure bundle for a list of patients", notes = EVALUATION_API_NOTES, response = String.class, tags = { "Measure Evaluation" }, extensions = { @Extension(properties = { @ExtensionProperty(name = DarkFeatureSwaggerFilter.DARK_FEATURE_NAME, value = CohortEngineRestConstants.DARK_LAUNCHED_PATIENT_LIST_MEASURE_EVALUATION) }) })
@ApiImplicitParams({ // This is necessary for the dark launch feature
@ApiImplicitParam(access = DarkFeatureSwaggerFilter.DARK_FEATURE_CONTROLLED, paramType = "header", dataType = "string"), // These are necessary to create a proper view of the request body that is all wrapped up in the Liberty IMultipartBody parameter
@ApiImplicitParam(name = REQUEST_DATA_PART, value = EXAMPLE_PATIENT_LIST_MEASURE_REQUEST_DATA_JSON, dataTypeClass = PatientListMeasureEvaluation.class, required = true, paramType = "form", type = "file"), @ApiImplicitParam(name = MEASURE_PART, value = EXAMPLE_MEASURE_ZIP, dataTypeClass = File.class, required = true, paramType = "form", type = "file") })
@ApiResponses(value = { @ApiResponse(code = 200, message = "Successful Operation: This API returns the JSON representation of a FHIR MeasureReport. A full example can be found at https://www.hl7.org/fhir/measurereport-cms146-cat2-example.html"), @ApiResponse(code = 400, message = "Bad Request", response = ServiceErrorList.class), @ApiResponse(code = 500, message = "Server Error", response = ServiceErrorList.class) })
public Response evaluatePatientListMeasure(@Context HttpServletRequest request, @ApiParam(value = ServiceBaseConstants.MINOR_VERSION_DESCRIPTION, required = true, defaultValue = ServiceBuildConstants.DATE) @QueryParam(CohortEngineRestHandler.VERSION) String version, @ApiParam(hidden = true, type = "file", required = true) IMultipartBody multipartBody) {
final String methodName = MethodNames.EVALUATE_PATIENT_LIST_MEASURE.getName();
Response response = null;
// Error out if feature is not enabled
ServiceBaseUtility.isDarkFeatureEnabled(CohortEngineRestConstants.DARK_LAUNCHED_PATIENT_LIST_MEASURE_EVALUATION);
try {
// Perform api setup
Response errorResponse = ServiceBaseUtility.apiSetup(version, logger, methodName);
if (errorResponse != null) {
return errorResponse;
}
if (multipartBody == null) {
throw new IllegalArgumentException("A multipart/form-data body is required");
}
IAttachment metadataAttachment = multipartBody.getAttachment(REQUEST_DATA_PART);
if (metadataAttachment == null) {
throw new IllegalArgumentException(String.format("Missing '%s' MIME attachment", REQUEST_DATA_PART));
}
IAttachment measureAttachment = multipartBody.getAttachment(MEASURE_PART);
if (measureAttachment == null) {
throw new IllegalArgumentException(String.format("Missing '%s' MIME attachment", MEASURE_PART));
}
// deserialize the PatientListMeasureEvaluation request
ObjectMapper om = new ObjectMapper();
PatientListMeasureEvaluation evaluationRequest = om.readValue(metadataAttachment.getDataHandler().getInputStream(), PatientListMeasureEvaluation.class);
// validate the contents of the evaluationRequest
validateBean(evaluationRequest);
FhirContext fhirContext = FhirContext.forR4();
try (InputStream is = measureAttachment.getDataHandler().getInputStream();
RetrieveCacheContext retrieveCacheContext = new DefaultRetrieveCacheContext()) {
MeasureEvaluator evaluator = createMeasureEvaluator(is, evaluationRequest.getDataServerConfig(), evaluationRequest.getTerminologyServerConfig(), evaluationRequest.isExpandValueSets(), evaluationRequest.getSearchPageSize(), retrieveCacheContext, fhirContext);
MeasureReport report = evaluator.evaluatePatientListMeasure(evaluationRequest.getPatientIds(), evaluationRequest.getMeasureContext(), evaluationRequest.getEvidenceOptions());
// The default serializer gets into an infinite loop when trying to serialize MeasureReport, so we use the
// HAPI encoder instead.
IParser parser = fhirContext.newJsonParser();
ResponseBuilder responseBuilder = Response.status(Response.Status.OK).header("Content-Type", "application/json").entity(parser.encodeResourceToString(report));
response = responseBuilder.build();
}
} catch (Throwable e) {
// map any exceptions caught into the proper REST error response objects
response = new CohortServiceExceptionMapper().toResponse(e);
} finally {
// Perform api cleanup
Response errorResponse = ServiceBaseUtility.apiCleanup(logger, methodName);
if (errorResponse != null) {
response = errorResponse;
}
}
return response;
}
use of com.ibm.cohort.engine.measure.cache.RetrieveCacheContext in project quality-measure-and-cohort-service by Alvearie.
the class R4MeasureEvaluatorBuilderTest method build_withExpandValueSetsFalse.
@Test
public void build_withExpandValueSetsFalse() throws Exception {
try (RetrieveCacheContext cacheContext = new DefaultRetrieveCacheContext(new CaffeineConfiguration<>())) {
MeasureEvaluator evaluator = new R4MeasureEvaluatorBuilder().withClientContext(clientContext).withRetrieveCacheContext(cacheContext).withExpandValueSets(false).build();
validateMeasureEvaluator(evaluator);
}
verify(0, getRequestedFor(urlMatching("/ValueSet/Type2Diabetes/\\$expand.*")));
verify(0, getRequestedFor(urlMatching("/Condition\\?code=" + DIABETES_CODESYSTEM + ".*")));
verify(1, getRequestedFor(urlMatching("/Condition\\?code%3Ain=Type2Diabetes.*")));
}
use of com.ibm.cohort.engine.measure.cache.RetrieveCacheContext in project quality-measure-and-cohort-service by Alvearie.
the class R4MeasureEvaluatorBuilderTest method build_withPageSizeOverride_withExpandValueSetsTrue.
@Test
public void build_withPageSizeOverride_withExpandValueSetsTrue() throws Exception {
try (RetrieveCacheContext cacheContext = new DefaultRetrieveCacheContext(new CaffeineConfiguration<>())) {
MeasureEvaluator evaluator = new R4MeasureEvaluatorBuilder().withClientContext(clientContext).withRetrieveCacheContext(cacheContext).withExpandValueSets(true).withPageSize(500).build();
validateMeasureEvaluator(evaluator);
}
verify(1, getRequestedFor(urlMatching("/ValueSet/Type2Diabetes/\\$expand.*")));
verify(1, getRequestedFor(urlMatching("/Condition\\?code=" + DIABETES_CODESYSTEM + ".*_count=500&_format=json")));
verify(0, getRequestedFor(urlMatching("/Condition\\?code%3Ain=Type2Diabetes.*_count=500&_format=json")));
}
use of com.ibm.cohort.engine.measure.cache.RetrieveCacheContext in project quality-measure-and-cohort-service by Alvearie.
the class R4MeasureEvaluatorBuilderTest method build_withCacheContext.
@Test
public void build_withCacheContext() throws Exception {
try (RetrieveCacheContext cacheContext = new DefaultRetrieveCacheContext(new CaffeineConfiguration<>())) {
MeasureEvaluator evaluator = new R4MeasureEvaluatorBuilder().withClientContext(clientContext).withRetrieveCacheContext(cacheContext).build();
validateMeasureEvaluator(evaluator);
}
verify(1, getRequestedFor(urlMatching("/ValueSet/Type2Diabetes/.*")));
verify(1, getRequestedFor(urlMatching("/Condition\\?code=" + DIABETES_CODESYSTEM + ".*")));
verify(0, getRequestedFor(urlMatching("/Condition\\?code%3Ain=Type2Diabetes.*")));
}
use of com.ibm.cohort.engine.measure.cache.RetrieveCacheContext in project quality-measure-and-cohort-service by Alvearie.
the class R4DataProviderFactoryTest method createDataProviderMap_withCacheContext.
@Test
public void createDataProviderMap_withCacheContext() throws Exception {
IGenericClient client = new Builder().withDefaultClient(getFhirServerConfig()).build().getDataClient();
CqlTerminologyProvider terminologyProvider = new R4RestFhirTerminologyProvider(client);
try (RetrieveCacheContext cacheContext = new DefaultRetrieveCacheContext(new CaffeineConfiguration<>())) {
Map<String, CqlDataProvider> map = R4DataProviderFactory.createDataProviderMap(client, terminologyProvider, cacheContext);
verifyDataProviderMap(map);
}
}
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