Examples with JochreDocument com.joliciel.jochre.doc.JochreDocument used on opensource projects

Example 11 with JochreDocument

use of com.joliciel.jochre.doc.JochreDocument in project jochre by urieli.

the class Jochre method doCommandEvaluate.

/**
 * Evaluate a given letter guessing model.
 *  @param criteria
 *          the criteria used to select the evaluation corpus
 */
public void doCommandEvaluate(CorpusSelectionCriteria criteria, File outputDir, MostLikelyWordChooser wordChooser, boolean reconstructLetters, boolean save, String suffix, boolean includeBeam, List<DocumentObserver> observers) throws IOException {
    ClassificationModel letterModel = jochreSession.getLetterModel();
    List<String> letterFeatureDescriptors = letterModel.getFeatureDescriptors();
    LetterFeatureParser letterFeatureParser = new LetterFeatureParser();
    Set<LetterFeature<?>> letterFeatures = letterFeatureParser.getLetterFeatureSet(letterFeatureDescriptors);
    LetterGuesser letterGuesser = new LetterGuesser(letterFeatures, letterModel.getDecisionMaker());
    String baseName = jochreSession.getLetterModelPath().substring(0, jochreSession.getLetterModelPath().indexOf("."));
    if (baseName.lastIndexOf("/") > 0)
        baseName = baseName.substring(baseName.lastIndexOf("/") + 1);
    baseName += suffix;
    BoundaryDetector boundaryDetector = null;
    if (reconstructLetters) {
        ShapeSplitter splitter = new TrainingCorpusShapeSplitter(jochreSession);
        ShapeMerger merger = new TrainingCorpusShapeMerger();
        boundaryDetector = new LetterByLetterBoundaryDetector(splitter, merger, jochreSession);
    } else {
        boundaryDetector = new OriginalBoundaryDetector();
    }
    ImageAnalyser evaluator = new BeamSearchImageAnalyser(boundaryDetector, letterGuesser, wordChooser, jochreSession);
    FScoreObserver fScoreObserver = null;
    LetterValidator letterValidator = new ComponentCharacterValidator(jochreSession);
    if (reconstructLetters) {
        OriginalShapeLetterAssigner originalShapeLetterAssigner = new OriginalShapeLetterAssigner();
        originalShapeLetterAssigner.setEvaluate(true);
        originalShapeLetterAssigner.setSave(save);
        originalShapeLetterAssigner.setLetterValidator(letterValidator);
        fScoreObserver = originalShapeLetterAssigner;
    } else {
        LetterAssigner letterAssigner = new LetterAssigner();
        letterAssigner.setSave(save);
        evaluator.addObserver(letterAssigner);
        fScoreObserver = new SimpleLetterFScoreObserver(letterValidator, jochreSession);
    }
    evaluator.addObserver(fScoreObserver);
    ErrorLogger errorLogger = new ErrorLogger(jochreSession);
    Writer errorWriter = null;
    File errorFile = new File(outputDir, baseName + "_errors.txt");
    errorFile.delete();
    errorWriter = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(errorFile, true), "UTF8"));
    errorLogger.setErrorWriter(errorWriter);
    evaluator.addObserver(errorLogger);
    LexiconErrorWriter lexiconErrorWriter = new LexiconErrorWriter(outputDir, baseName, wordChooser, jochreSession);
    if (documentGroups != null)
        lexiconErrorWriter.setDocumentGroups(documentGroups);
    lexiconErrorWriter.setIncludeBeam(includeBeam);
    // find all document names (alphabetical ordering)
    Set<String> documentNameSet = new TreeSet<>();
    JochreCorpusImageReader imageReader1 = new JochreCorpusImageReader(jochreSession);
    CorpusSelectionCriteria docCriteria = new CorpusSelectionCriteria();
    docCriteria.setImageStatusesToInclude(criteria.getImageStatusesToInclude());
    docCriteria.setImageId(criteria.getImageId());
    docCriteria.setDocumentId(criteria.getDocumentId());
    docCriteria.setDocumentIds(criteria.getDocumentIds());
    imageReader1.setSelectionCriteria(docCriteria);
    JochreDocument currentDoc = null;
    while (imageReader1.hasNext()) {
        JochreImage image = imageReader1.next();
        if (!image.getPage().getDocument().equals(currentDoc)) {
            currentDoc = image.getPage().getDocument();
            documentNameSet.add(currentDoc.getName());
        }
    }
    List<String> documentNames = new ArrayList<>(documentNameSet);
    lexiconErrorWriter.setDocumentNames(documentNames);
    evaluator.addObserver(lexiconErrorWriter);
    JochreCorpusImageProcessor imageProcessor = new JochreCorpusImageProcessor(criteria, jochreSession);
    imageProcessor.addObserver(evaluator);
    for (DocumentObserver observer : observers) imageProcessor.addObserver(observer);
    try {
        imageProcessor.process();
    } finally {
        if (errorWriter != null)
            errorWriter.close();
    }
    LOG.debug("F-score for " + jochreSession.getLetterModelPath() + ": " + fScoreObserver.getFScoreCalculator().getTotalFScore());
    String modelFileName = baseName;
    if (reconstructLetters)
        modelFileName += "_Reconstruct";
    File fscoreFile = new File(outputDir, modelFileName + "_fscores.csv");
    Writer fscoreWriter = errorWriter = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(fscoreFile, true), jochreSession.getCsvEncoding()));
    fScoreObserver.getFScoreCalculator().writeScoresToCSV(fscoreWriter);
}

Example 12 with JochreDocument

use of com.joliciel.jochre.doc.JochreDocument in project jochre by urieli.

the class Jochre method doCommandUpdateImages.

/**
 * Update the images in an existing Jochre document.
 *
 * @param filename
 *          the PDF file containing the images
 * @param docId
 *          the id of the document to update
 * @param pаges
 *          the pages to process, empty means all
 */
public void doCommandUpdateImages(String filename, int docId, Set<Integer> pages) {
    if (filename.length() == 0)
        throw new RuntimeException("Missing argument: file");
    if (docId < 0)
        throw new RuntimeException("Missing argument: docId");
    DocumentDao documentDao = DocumentDao.getInstance(jochreSession);
    JochreDocument doc = documentDao.loadJochreDocument(docId);
    if (filename.toLowerCase().endsWith(".pdf")) {
        File pdfFile = new File(filename);
        PdfDocumentProcessor pdfDocumentProcessor = new PdfDocumentProcessor(pdfFile, pages, new PdfImageUpdater(doc));
        pdfDocumentProcessor.process();
    } else {
        throw new RuntimeException("Unrecognised file extension");
    }
}