Examples with Composition com.nedap.archie.rm.composition.Composition used on opensource projects

Example 76 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class UnflattenerTest method testUnflattenBefundDerBlutgasanalyse.

@Test
public void testUnflattenBefundDerBlutgasanalyse() {
    Unflattener cut = new Unflattener(new TestDataTemplateProvider());
    BefundDerBlutgasanalyseComposition dto = new BefundDerBlutgasanalyseComposition();
    LaborergebnisObservation laborergebnisObservation = new LaborergebnisObservation();
    KohlendioxidpartialdruckCluster kohlendioxidpartialdruck = new KohlendioxidpartialdruckCluster();
    kohlendioxidpartialdruck.setAnalytResultatMagnitude(22d);
    laborergebnisObservation.setKohlendioxidpartialdruck(kohlendioxidpartialdruck);
    dto.setLaborergebnis(laborergebnisObservation);
    Composition rmObject = (Composition) cut.unflatten(dto);
    assertThat(rmObject).isNotNull();
    List<Object> clusters = rmObject.itemsAtPath("/content[openEHR-EHR-OBSERVATION.laboratory_test_result.v1]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.laboratory_test_analyte.v1]");
    assertThat(clusters).size().isEqualTo(1);
}

Example 77 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class UnflattenerTest method testUnflattenSingleEvent.

@Test
public void testUnflattenSingleEvent() {
    Unflattener cut = new Unflattener(new TestDataTemplateProvider());
    KorpergrosseComposition dto = new KorpergrosseComposition();
    dto.setGrosseLange(new GrosseLangeObservation());
    dto.getGrosseLange().setGrosseLangeMagnitude(22d);
    Composition rmObject = (Composition) cut.unflatten(dto);
    assertThat(rmObject).isNotNull();
    Object event = rmObject.itemAtPath("/content[openEHR-EHR-OBSERVATION.height.v2]/data[at0001]/events[at0002]");
    assertThat(event).isNotNull();
    assertThat(event.getClass()).isEqualTo(PointEvent.class);
    Object quantity = ((PointEvent) event).itemAtPath("/data[at0003]/items[at0004]/value");
    assertThat(quantity).isNotNull();
    assertThat(quantity.getClass()).isEqualTo(DvQuantity.class);
    assertThat(((DvQuantity) quantity).getMagnitude()).isEqualTo(22d);
}

Example 78 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class ParticipationTestIT method testParticipation.

@Test
@Ignore("see https://github.com/ehrbase/ehrbase/issues/710")
public void testParticipation() throws IOException {
    ehr = openEhrClient.ehrEndpoint().createEhr();
    Composition composition = new CanonicalJson().unmarshal(IOUtils.toString(CompositionTestDataCanonicalJson.PARTICIPATION_NO_CONTENT.getStream(), StandardCharsets.UTF_8), Composition.class);
    VersionUid versionUid = openEhrClient.compositionEndpoint(ehr).mergeRaw(composition);
    Optional<Composition> postedComposition = openEhrClient.compositionEndpoint(ehr).findRaw(versionUid.getUuid());
    assertThat(postedComposition.get()).isNotNull();
    // check the actual participation IDs and Names
    List<Participation> participations = postedComposition.get().getContext().getParticipations();
    List<String> names = participations.stream().map(p -> p.getPerformer()).map(p -> ((PartyIdentified) p).getName()).collect(Collectors.toList());
    assertThat(names).containsExactlyInAnyOrder("Dr. Marcus Johnson", "Zaza Markham");
    List<String> ids = participations.stream().map(p -> p.getPerformer()).map(p -> p.getExternalRef().getId().getValue()).collect(Collectors.toList());
    assertThat(ids).containsExactlyInAnyOrder("000", "123");
    // use the sames IDs, but change one name. This raises an exception for conflicting identity!
    ((PartyIdentified) composition.getContext().getParticipations().get(0).getPerformer()).setName("Dummy");
    try {
        openEhrClient.compositionEndpoint(ehr).mergeRaw(composition);
        fail("Didn't detect conflicting identity!");
    } catch (WrongStatusCodeException e) {
    // continue
    }
    // Now, keep the same names, but change an externalRef id
    composition = new CanonicalJson().unmarshal(IOUtils.toString(CompositionTestDataCanonicalJson.PARTICIPATION_NO_CONTENT.getStream(), StandardCharsets.UTF_8), Composition.class);
    composition.getContext().getParticipations().get(0).getPerformer().getExternalRef().setId(new GenericId("ABC", "HOSPITAL-NS"));
    versionUid = openEhrClient.compositionEndpoint(ehr).mergeRaw(composition);
    postedComposition = openEhrClient.compositionEndpoint(ehr).findRaw(versionUid.getUuid());
    assertThat(postedComposition.get()).isNotNull();
    // check the actual participation IDs and Names
    participations = postedComposition.get().getContext().getParticipations();
    names = participations.stream().map(p -> p.getPerformer()).map(p -> ((PartyIdentified) p).getName()).collect(Collectors.toList());
    assertThat(names).containsExactlyInAnyOrder("Dr. Marcus Johnson", "Zaza Markham");
    ids = participations.stream().map(p -> p.getPerformer()).map(p -> p.getExternalRef().getId().getValue()).collect(Collectors.toList());
    assertThat(ids).containsExactlyInAnyOrder("ABC", "123");
    // use the same name and id, but in another namespace
    composition = new CanonicalJson().unmarshal(IOUtils.toString(CompositionTestDataCanonicalJson.PARTICIPATION_NO_CONTENT.getStream(), StandardCharsets.UTF_8), Composition.class);
    composition.getContext().getParticipations().get(0).getPerformer().getExternalRef().setNamespace("ANOTHER_NAMESPACE");
    versionUid = openEhrClient.compositionEndpoint(ehr).mergeRaw(composition);
    postedComposition = openEhrClient.compositionEndpoint(ehr).findRaw(versionUid.getUuid());
    assertThat(postedComposition.get()).isNotNull();
    // check the actual participation IDs and Names
    participations = postedComposition.get().getContext().getParticipations();
    List<String> namespaces = participations.stream().map(p -> p.getPerformer()).map(p -> p.getExternalRef().getNamespace()).collect(Collectors.toList());
    assertThat(namespaces).containsExactlyInAnyOrder("ANOTHER_NAMESPACE", "ANOTHER-HOSPITAL-NS");
}

Example 79 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class ArbitraryQueryFeederAuditIT method setUp.

@Before
public void setUp() throws IOException {
    ehrUUID = openEhrClient.ehrEndpoint().createEhr();
    compositionEndpoint = openEhrClient.compositionEndpoint(ehrUUID);
    aComposition = new CanonicalJson().unmarshal(IOUtils.toString(CompositionTestDataCanonicalJson.FEEDER_AUDIT_DETAILS.getStream(), StandardCharsets.UTF_8), Composition.class);
    Flattener flattener = new Flattener(new TestDataTemplateProvider());
    TestAllTypesEnV1Composition testAllTypesEnV1Composition = flattener.flatten(aComposition, TestAllTypesEnV1Composition.class);
    // create the composition
    TestAllTypesEnV1Composition comp = compositionEndpoint.mergeCompositionEntity(testAllTypesEnV1Composition);
    compositionUUID = comp.getVersionUid().getUuid();
    arbitraryQuery = new ArbitraryQuery(ehrUUID, openEhrClient);
}

Example 80 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class ArbitraryQueryOtherContextIT method setUp.

@Before
public void setUp() throws IOException {
    // normal test run
    ehrUUID = openEhrClient.ehrEndpoint().createEhr();
    compositionEndpoint = openEhrClient.compositionEndpoint(ehrUUID);
    aComposition = new CanonicalJson().unmarshal(IOUtils.toString(CompositionTestDataCanonicalJson.VIROLOGY_FINDING_WITH_SPECIMEN_NO_UPDATE.getStream(), StandardCharsets.UTF_8), Composition.class);
    Flattener flattener = new Flattener(new TestDataTemplateProvider());
    VirologischerBefundComposition virologischerBefundComposition = flattener.flatten(aComposition, VirologischerBefundComposition.class);
    // create the composition
    VirologischerBefundComposition comp = compositionEndpoint.mergeCompositionEntity(virologischerBefundComposition);
    compositionUUID = comp.getVersionUid().getUuid();
    arbitraryQuery = new ArbitraryQuery(ehrUUID, openEhrClient);
    simpleSelectQueryEngine = new SimpleSelectQuery(ehrUUID, compositionUUID, openEhrClient);
}