Examples with Observation com.nedap.archie.rm.composition.Observation used on opensource projects

Example 6 with Observation

use of com.nedap.archie.rm.composition.Observation in project openEHR_SDK by ehrbase.

the class UnflattenerTest method testUnflattenEhrbaseMultiOccurrenceDeV1.

@Test
public void testUnflattenEhrbaseMultiOccurrenceDeV1() {
    Unflattener cut = new Unflattener(new TestDataTemplateProvider());
    EhrbaseMultiOccurrenceDeV1Composition dto = TestData.buildEhrbaseMultiOccurrenceDeV1();
    Composition rmObject = (Composition) cut.unflatten(dto);
    assertThat(rmObject).isNotNull();
    assertThat(rmObject.getArchetypeDetails().getTemplateId().getValue()).isEqualTo("ehrbase_multi_occurrence.de.v1");
    List<Object> observationList = rmObject.itemsAtPath("/content[openEHR-EHR-OBSERVATION.body_temperature.v2]");
    assertThat(observationList).size().isEqualTo(2);
    Observation observation1 = (Observation) observationList.get(0);
    List<Object> objects = observation1.itemsAtPath("/data[at0002]/events");
    assertThat(objects).extracting(o -> ((PointEvent) o)).extracting(p -> (DvQuantity) p.itemAtPath("/data[at0001]/items[at0004]/value")).extracting(DvQuantity::getMagnitude).containsExactlyInAnyOrder(11d, 22d);
    DvCodedText dvCodedText = (DvCodedText) observation1.itemAtPath("/protocol[at0020]/items[at0021]/value");
    assertThat(dvCodedText.getValue()).isEqualTo("Forehead");
    Observation observation2 = (Observation) observationList.get(1);
    DvText dvText = (DvText) observation2.itemAtPath("/protocol[at0020]/items[at0021]/value");
    assertFalse(dvText instanceof DvCodedText);
    assertThat(dvText.getValue()).isEqualTo("location");
}

Example 7 with Observation

use of com.nedap.archie.rm.composition.Observation in project openEHR_SDK by ehrbase.

the class FlattenerTest method testFlattenSingleEventIntervallEvent.

@Test
public void testFlattenSingleEventIntervallEvent() {
    Unflattener unflattener = new Unflattener(new TestDataTemplateProvider());
    KorpergrosseComposition dto = new KorpergrosseComposition();
    dto.setGrosseLange(new GrosseLangeObservation());
    dto.getGrosseLange().setGrosseLangeMagnitude(22d);
    Composition rmObject = (Composition) unflattener.unflatten(dto);
    Observation observation = (Observation) rmObject.getContent().get(0);
    Event<ItemStructure> event = observation.getData().getEvents().get(0);
    observation.getData().getEvents().remove(event);
    IntervalEvent<ItemStructure> intervalEvent = new IntervalEvent<>();
    intervalEvent.setData(event.getData());
    intervalEvent.setArchetypeNodeId(event.getArchetypeNodeId());
    intervalEvent.setSampleCount(10L);
    observation.getData().getEvents().add(intervalEvent);
    assertThat(rmObject).isNotNull();
    Flattener cut = new Flattener(new TestDataTemplateProvider());
    KorpergrosseComposition actual = cut.flatten(rmObject, KorpergrosseComposition.class);
    assertThat(actual.getGrosseLange().getGrosseLangeMagnitude()).isEqualTo(22d);
}

Example 8 with Observation

use of com.nedap.archie.rm.composition.Observation in project openEHR_SDK by ehrbase.

the class FlatJsonUnmarshallerTest method unmarshalUuid.

@Test
public void unmarshalUuid() throws IOException, XmlException {
    OPERATIONALTEMPLATE template = TemplateDocument.Factory.parse(OperationalTemplateTestData.CONFORMANCE.getStream()).getTemplate();
    WebTemplate webTemplate = new OPTParser(template).parse();
    FlatJsonUnmarshaller cut = new FlatJsonUnmarshaller();
    String flat = IOUtils.toString(CompositionTestDataConformanceSDTJson.EHRBASE_CONFORMANCE_OBSERVATION.getStream(), StandardCharsets.UTF_8);
    Composition actual = cut.unmarshal(flat, webTemplate);
    assertThat(actual).isNotNull();
    Observation observation = (Observation) actual.itemAtPath("/content[openEHR-EHR-SECTION.conformance_section.v0]/items[openEHR-EHR-OBSERVATION.conformance_observation.v0]");
    assertThat(observation.getUid().getValue()).hasToString("9fcc1c70-9349-444d-b9cb-8fa817697f5e");
    assertThat(observation.getData().getUid()).isNull();
}

Example 9 with Observation

use of com.nedap.archie.rm.composition.Observation in project openEHR_SDK by ehrbase.

the class ContainmentTest method testContainment.

@Test
public void testContainment() {
    List<TestCase> testCases = new ArrayList<>();
    testCases.add(new TestCase(1, "openEHR-EHR-COMPOSITION.sample_encounter.v1", Composition.class, "COMPOSITION v[openEHR-EHR-COMPOSITION.sample_encounter.v1]"));
    testCases.add(new TestCase(2, "openEHR-EHR-OBSERVATION.sample_blood_pressure.v1", Observation.class, "OBSERVATION v[openEHR-EHR-OBSERVATION.sample_blood_pressure.v1]"));
    testCases.add(new TestCase(3, "openEHR-EHR-ADMIN_ENTRY.discharge.v1", AdminEntry.class, "ADMIN_ENTRY v[openEHR-EHR-ADMIN_ENTRY.discharge.v1]"));
    EntityQuery query = mock(EntityQuery.class);
    when(query.buildVariabelName(any())).thenReturn("v");
    testCases.forEach(t -> {
        Containment cut = new Containment(t.archetype);
        cut.bindQuery(query);
        assertThat(cut.getType()).as(String.format("Test Case %d", t.id)).isEqualTo(t.type);
        assertThat(cut.buildAQL()).as(String.format("Test Case %d", t.id)).isEqualTo(t.aql);
    });
}

Example 10 with Observation

use of com.nedap.archie.rm.composition.Observation in project openEHR_SDK by ehrbase.

the class WebTemplateSkeletonBuilderTest method build.

@Test
public void build() throws XmlException, IOException {
    org.openehr.schemas.v1.TemplateDocument document = org.openehr.schemas.v1.TemplateDocument.Factory.parse(OperationalTemplateTestData.BLOOD_PRESSURE_SIMPLE.getStream());
    OPERATIONALTEMPLATE operationaltemplate = document.getTemplate();
    WebTemplate webTemplate = new OPTParser(operationaltemplate).parse();
    Composition generate = WebTemplateSkeletonBuilder.build(webTemplate, true);
    assertThat(generate).isNotNull();
    assertThat(generate.getCategory().getDefiningCode()).extracting(CodePhrase::getCodeString, c -> c.getTerminologyId().getValue()).containsExactly("433", "openehr");
    assertThat(generate.itemAtPath("/composer")).isNotNull();
    assertThat(generate.itemAtPath("/context/end_time")).isNotNull();
    assertThat(generate.itemAtPath("/content[openEHR-EHR-OBSERVATION.sample_blood_pressure.v1]")).isNotNull();
    assertThat(((Observation) generate.itemAtPath("/content[openEHR-EHR-OBSERVATION.sample_blood_pressure.v1]")).getEncoding()).extracting(CodePhrase::getCodeString, c -> c.getTerminologyId().getValue()).containsExactly("UTF-8", "IANA_character-sets");
    assertThat(generate.itemAtPath("/content[openEHR-EHR-OBSERVATION.sample_blood_pressure.v1]/data[at0001]/events[at0002]/state[at0007]/items[at1005]/value")).isNotNull();
}