Examples with CodePhrase com.nedap.archie.rm.datatypes.CodePhrase used on opensource projects

Example 61 with CodePhrase

use of com.nedap.archie.rm.datatypes.CodePhrase in project openEHR_SDK by ehrbase.

the class DvCodedTextTest method testFailOnError_Enabled.

@Test
void testFailOnError_Enabled() throws Exception {
    var validationSupport = new FhirTerminologyValidation("https://wrong.terminology.server/fhir");
    var codePhrase = new CodePhrase(new TerminologyId("http://hl7.org/fhir/observation-status"), "B");
    var dvCodedText = new DvCodedText("Buccal", codePhrase);
    var validator = new DvCodedTextValidator(validationSupport);
    var node = parseNode("/webtemplate_nodes/dv_codedtext_fhir_valueset.json");
    assertThrows(ExternalTerminologyValidationException.class, () -> validator.validate(dvCodedText, node));
}

Example 62 with CodePhrase

use of com.nedap.archie.rm.datatypes.CodePhrase in project openEHR_SDK by ehrbase.

the class DvCodedTextTest method testValidate.

@Test
void testValidate() throws Exception {
    var validator = new DvCodedTextValidator();
    var node = parseNode("/webtemplate_nodes/dv_codedtext.json");
    var dvCodedText = new DvCodedText("First", new CodePhrase(new TerminologyId("local"), "at0028"));
    var result = validator.validate(dvCodedText, node);
    assertTrue(result.isEmpty());
    dvCodedText = new DvCodedText("Test", new CodePhrase(new TerminologyId("local"), "at0028"));
    result = validator.validate(dvCodedText, node);
    assertEquals(1, result.size());
    dvCodedText = new DvCodedText("First", new CodePhrase(new TerminologyId("local"), "at0029"));
    result = validator.validate(dvCodedText, node);
    assertEquals(1, result.size());
}

Example 63 with CodePhrase

use of com.nedap.archie.rm.datatypes.CodePhrase in project openEHR_SDK by ehrbase.

the class DvCodedTextTest method testValidate_FhirCodeSystem_WrongTerminologyId.

@Test
void testValidate_FhirCodeSystem_WrongTerminologyId() throws Exception {
    var codePhrase = new CodePhrase(new TerminologyId("http://hl7.org/fhir/name-use"), "usual");
    // Mockito initialization
    Mockito.when(fhirTerminologyValidationMock.supports("//fhir.hl7.org/CodeSystem?url=http://hl7.org/fhir/observation-status")).thenReturn(true);
    Mockito.doThrow(new ConstraintViolationException(List.of(new ConstraintViolation("/test/dv_coded_text_fhir_value_set", "The terminology http://hl7.org/fhir/name-use must be http://hl7.org/fhir/observation-status")))).when(fhirTerminologyValidationMock).validate("/test/dv_coded_text_fhir_code_system", "//fhir.hl7.org/CodeSystem?url=http://hl7.org/fhir/observation-status", codePhrase);
    var validator = new DvCodedTextValidator(fhirTerminologyValidationMock);
    var node = parseNode("/webtemplate_nodes/dv_codedtext_fhir_codesystem.json");
    var result = validator.validate(new DvCodedText("Usual", codePhrase), node);
    assertEquals(1, result.size());
}

Example 64 with CodePhrase

use of com.nedap.archie.rm.datatypes.CodePhrase in project openEHR_SDK by ehrbase.

the class DvCodedTextTest method testValidate_FhirValueSet.

@Test
void testValidate_FhirValueSet() throws Exception {
    var codePhrase = new CodePhrase(new TerminologyId("http://terminology.hl7.org/CodeSystem/v3-EntityNameUseR2"), "UKN");
    // Mockito initialization
    Mockito.when(fhirTerminologyValidationMock.supports("//fhir.hl7.org/ValueSet/$expand?url=http://terminology.hl7.org/ValueSet/v3-EntityNameUseR2")).thenReturn(true);
    Mockito.doNothing().when(fhirTerminologyValidationMock).validate("/test/dv_coded_text_fhir_value_set", "//fhir.hl7.org/ValueSet/$expand?url=http://terminology.hl7.org/ValueSet/v3-EntityNameUseR2", codePhrase);
    var validator = new DvCodedTextValidator(fhirTerminologyValidationMock);
    var node = parseNode("/webtemplate_nodes/dv_codedtext_fhir_valueset.json");
    var result = validator.validate(new DvCodedText("Anonymous", codePhrase), node);
    assertTrue(result.isEmpty());
}

Example 65 with CodePhrase

use of com.nedap.archie.rm.datatypes.CodePhrase in project ehrbase by ehrbase.

the class EntryAccess method retrieveInstanceInComposition.

/**
 * @throws IllegalArgumentException if DB is inconsistent or operation fails
 */
public static List<I_EntryAccess> retrieveInstanceInComposition(I_DomainAccess domainAccess, I_CompositionAccess compositionAccess) {
    Result<EntryRecord> entryRecords = domainAccess.getContext().selectFrom(ENTRY).where(ENTRY.COMPOSITION_ID.eq(compositionAccess.getId())).fetch();
    // build the list of parameters to recreate the composition
    Map<SystemValue, Object> values = new HashMap<>();
    values.put(SystemValue.COMPOSER, new PersistedPartyProxy(domainAccess).retrieve(compositionAccess.getComposerId()));
    // optional handling for persistent compositions that do not have a context
    Optional<I_ContextAccess> opContextAccess = compositionAccess.getContextId().map(id -> I_ContextAccess.retrieveInstance(domainAccess, id));
    opContextAccess.ifPresent(context -> values.put(SystemValue.CONTEXT, context.mapRmEventContext()));
    values.put(SystemValue.LANGUAGE, new CodePhrase(new TerminologyId("ISO_639-1"), compositionAccess.getLanguageCode()));
    String territory2letters = domainAccess.getContext().fetchOne(TERRITORY, TERRITORY.CODE.eq(compositionAccess.getTerritoryCode())).getTwoletter();
    values.put(SystemValue.TERRITORY, new CodePhrase(new TerminologyId("ISO_3166-1"), territory2letters));
    if (compositionAccess.getFeederAudit() != null) {
        values.put(SystemValue.FEEDER_AUDIT, new FeederAuditEncoding().fromDB(compositionAccess.getFeederAudit()));
    }
    if (compositionAccess.getLinks() != null) {
        values.put(SystemValue.LINKS, new LinksEncoding().fromDB(compositionAccess.getLinks()));
    }
    List<I_EntryAccess> content = new ArrayList<>();
    try {
        EntryAccess entryAccess = new EntryAccess(domainAccess);
        for (EntryRecord record : entryRecords) {
            // set the record UID in the composition with matching version number
            Integer version = I_CompositionAccess.getLastVersionNumber(domainAccess, compositionAccess.getId());
            values.put(SystemValue.UID, new ObjectVersionId(compositionAccess.getId().toString() + "::" + domainAccess.getServerConfig().getNodename() + "::" + version));
            entryAccess.entryRecord = record;
            String value = record.getEntry().data();
            entryAccess.composition = new RawJson().unmarshal(value, Composition.class);
            // continuing optional handling for persistent compositions
            opContextAccess.map(I_ContextAccess::mapRmEventContext).ifPresent(ec -> values.put(SystemValue.CONTEXT, ec));
            values.put(SystemValue.CATEGORY, new RecordedDvCodedText().fromDB(record, ENTRY.CATEGORY));
            setCompositionAttributes(entryAccess.composition, values);
            buildArchetypeDetails(entryAccess);
            content.add(entryAccess);
        }
    } catch (Exception e) {
        throw new IllegalArgumentException(DB_INCONSISTENCY + e);
    }
    return content;
}