Examples with DvCodedText com.nedap.archie.rm.datavalues.DvCodedText used on opensource projects

Example 16 with DvCodedText

use of com.nedap.archie.rm.datavalues.DvCodedText in project openEHR_SDK by ehrbase.

the class DefaultRestAqlEndpoint method extractValue.

private Object extractValue(String valueAsString, Class<?> aClass) throws com.fasterxml.jackson.core.JsonProcessingException {
    Object object;
    if (StringUtils.isBlank(valueAsString) || "null".equals(valueAsString)) {
        object = null;
    } else if (aClass.isAnnotationPresent(Entity.class)) {
        RMObject locatable = AQL_OBJECT_MAPPER.readValue(valueAsString, RMObject.class);
        object = new Flattener(defaultRestClient.getTemplateProvider()).flatten(locatable, aClass);
        if (locatable instanceof Composition) {
            Flattener.addVersion(object, new VersionUid(((Composition) locatable).getUid().getValue()));
        }
    } else if (EnumValueSet.class.isAssignableFrom(aClass)) {
        RMObject rmObject = AQL_OBJECT_MAPPER.readValue(valueAsString, RMObject.class);
        final String codeString;
        if (CodePhrase.class.isAssignableFrom(rmObject.getClass())) {
            codeString = ((CodePhrase) rmObject).getCodeString();
        } else {
            codeString = ((DvCodedText) rmObject).getDefiningCode().getCodeString();
        }
        object = Arrays.stream(aClass.getEnumConstants()).map(e -> (EnumValueSet) e).filter(e -> e.getCode().equals(codeString)).findAny().orElseThrow(() -> new ClientException(String.format("Unknown code %s for %s", codeString, aClass.getSimpleName())));
    } else {
        object = AQL_OBJECT_MAPPER.readValue(valueAsString, aClass);
    }
    return object;
}

Example 17 with DvCodedText

use of com.nedap.archie.rm.datavalues.DvCodedText in project openEHR_SDK by ehrbase.

the class TermMappingTestOverwritten method testTermMappingFromJson.

@Override
@Test
public void testTermMappingFromJson() throws Exception {
    String template = this.getFileContent("/res/Demo Vitals.xml");
    String rawJson = this.getFileContent("/res/TmComposition.json");
    Composition unmarshal = new CanonicalJson().unmarshal(rawJson.replace("\"@class\"", "\"_type\""), Composition.class);
    String structuredJson = getFlatJson(template, FlatFormat.STRUCTURED).marshal(unmarshal);
    Composition actualComposition = getFlatJson(template, FlatFormat.STRUCTURED).unmarshal(structuredJson);
    List<TermMapping> termMappings = ((DvText) actualComposition.itemsAtPath("/content[openEHR-EHR-SECTION.ispek_dialog.v1]/items[openEHR-EHR-OBSERVATION.body_temperature-zn.v1]/data[at0002]/events/data/items[at0.63]/value").get(0)).getMappings();
    assertThat(termMappings).extracting(TermMapping::getMatch, t -> t.getTarget().getCodeString(), t -> t.getTarget().getTerminologyId().getValue(), TermMapping::getPurpose).containsExactlyInAnyOrder(new Tuple('=', "21794005", "SNOMED-CT", null), new Tuple('=', "W.11.7", "RTX", null));
    List<TermMapping> termMappings2 = ((DvText) actualComposition.itemsAtPath("/content[openEHR-EHR-SECTION.ispek_dialog.v1]/items[openEHR-EHR-OBSERVATION.body_temperature-zn.v1]/data[at0002]/events/state/items[at0041]/value").get(0)).getMappings();
    assertThat(termMappings2).extracting(TermMapping::getMatch, t -> t.getTarget().getCodeString(), t -> t.getTarget().getTerminologyId().getValue(), TermMapping::getPurpose).containsExactlyInAnyOrder(new Tuple('=', "99.1", "IAXA", new DvCodedText("Purpose 1", new CodePhrase(new TerminologyId("Purposes"), "p.0.63.1"))));
}

Example 18 with DvCodedText

use of com.nedap.archie.rm.datavalues.DvCodedText in project openEHR_SDK by ehrbase.

the class DvCodedTextTest method testValidate_FhirCodeSystem.

@Test
void testValidate_FhirCodeSystem() throws Exception {
    var codePhrase = new CodePhrase(new TerminologyId("http://hl7.org/fhir/observation-status"), "final");
    // Mockito initialization
    Mockito.when(fhirTerminologyValidationMock.supports("//fhir.hl7.org/CodeSystem?url=http://hl7.org/fhir/observation-status")).thenReturn(true);
    Mockito.doNothing().when(fhirTerminologyValidationMock).validate("/test/dv_coded_text_fhir_code_system", "//fhir.hl7.org/CodeSystem?url=http://hl7.org/fhir/observation-status", codePhrase);
    var validator = new DvCodedTextValidator(fhirTerminologyValidationMock);
    var node = parseNode("/webtemplate_nodes/dv_codedtext_fhir_codesystem.json");
    var result = validator.validate(new DvCodedText("Final", codePhrase), node);
    assertTrue(result.isEmpty());
}

Example 19 with DvCodedText

use of com.nedap.archie.rm.datavalues.DvCodedText in project openEHR_SDK by ehrbase.

the class DvCodedTextTest method testValidate_UnsupportedExternalTerminology.

@Test
void testValidate_UnsupportedExternalTerminology() throws Exception {
    Mockito.when(fhirTerminologyValidationMock.supports("ICD10")).thenReturn(false);
    var node = parseNode("/webtemplate_nodes/dv_codedtext_unsupported.json");
    var dvCodedText = new DvCodedText("Iodine-deficiency related thyroid disorders and allied conditions", new CodePhrase(new TerminologyId("ICD10"), "E01"));
    var result = new DvCodedTextValidator(fhirTerminologyValidationMock).validate(dvCodedText, node);
    assertTrue(result.isEmpty());
}

Example 20 with DvCodedText

use of com.nedap.archie.rm.datavalues.DvCodedText in project openEHR_SDK by ehrbase.

the class DvCodedTextTest method testValidate_FhirCodeSystem_WrongCode.

@Test
void testValidate_FhirCodeSystem_WrongCode() throws Exception {
    var codePhrase = new CodePhrase(new TerminologyId("http://hl7.org/fhir/observation-status"), "casual");
    // Mockito initialization
    Mockito.when(fhirTerminologyValidationMock.supports("//fhir.hl7.org/CodeSystem?url=http://hl7.org/fhir/observation-status")).thenReturn(true);
    Mockito.doThrow(new ConstraintViolationException(List.of(new ConstraintViolation("/test/dv_coded_text_fhir_code_system", "The specified code 'casual' is not known to belong to the specified code system 'http://hl7.org/fhir/observation-status'")))).when(fhirTerminologyValidationMock).validate("/test/dv_coded_text_fhir_code_system", "//fhir.hl7.org/CodeSystem?url=http://hl7.org/fhir/observation-status", codePhrase);
    var validator = new DvCodedTextValidator(fhirTerminologyValidationMock);
    var node = parseNode("/webtemplate_nodes/dv_codedtext_fhir_codesystem.json");
    var result = validator.validate(new DvCodedText("Casual", codePhrase), node);
    assertEquals(1, result.size());
}