Examples with TerminologyId com.nedap.archie.rm.support.identification.TerminologyId used on opensource projects

Example 6 with TerminologyId

use of com.nedap.archie.rm.support.identification.TerminologyId in project ehrbase by ehrbase.

the class EntryAccess method retrieveInstanceInCompositionVersion.

public static List<I_EntryAccess> retrieveInstanceInCompositionVersion(I_DomainAccess domainAccess, I_CompositionAccess compositionHistoryAccess, int version) {
    Result<EntryHistoryRecord> entryHistoryRecords = domainAccess.getContext().selectFrom(ENTRY_HISTORY).where(ENTRY_HISTORY.COMPOSITION_ID.eq(compositionHistoryAccess.getId())).and(ENTRY_HISTORY.SYS_TRANSACTION.eq(compositionHistoryAccess.getSysTransaction())).fetch();
    // build the list of parameters to recreate the composition
    Map<SystemValue, Object> values = new HashMap<>();
    values.put(SystemValue.COMPOSER, new PersistedPartyProxy(domainAccess).retrieve(compositionHistoryAccess.getComposerId()));
    EventContext context = I_ContextAccess.retrieveHistoricalEventContext(domainAccess, compositionHistoryAccess.getId(), compositionHistoryAccess.getSysTransaction());
    if (context == null) {
        // unchanged context use the current one!
        // also optional handling of context, because persistent compositions don't have a context
        compositionHistoryAccess.getContextId().ifPresent(uuid -> I_ContextAccess.retrieveInstance(domainAccess, uuid).mapRmEventContext());
    }
    values.put(SystemValue.CONTEXT, context);
    values.put(SystemValue.LANGUAGE, new CodePhrase(new TerminologyId("ISO_639-1"), compositionHistoryAccess.getLanguageCode()));
    String territory2letters = domainAccess.getContext().fetchOne(TERRITORY, TERRITORY.CODE.eq(compositionHistoryAccess.getTerritoryCode())).getTwoletter();
    values.put(SystemValue.TERRITORY, new CodePhrase(new TerminologyId("ISO_3166-1"), territory2letters));
    values.put(SystemValue.FEEDER_AUDIT, new FeederAuditEncoding().fromDB(compositionHistoryAccess.getFeederAudit()));
    List<I_EntryAccess> content = new ArrayList<>();
    try {
        EntryAccess entryAccess = new EntryAccess(domainAccess);
        for (EntryHistoryRecord record : entryHistoryRecords) {
            // set the record UID in the composition
            UUID compositionId = compositionHistoryAccess.getId();
            values.put(SystemValue.UID, new ObjectVersionId(compositionId.toString() + "::" + domainAccess.getServerConfig().getNodename() + "::" + version));
            entryAccess.entryRecord = domainAccess.getContext().newRecord(ENTRY);
            entryAccess.entryRecord.from(record);
            entryAccess.composition = new RawJson().unmarshal(record.getEntry().data(), Composition.class);
            setCompositionAttributes(entryAccess.composition, values);
            buildArchetypeDetails(entryAccess);
            content.add(entryAccess);
        }
    } catch (Exception e) {
        throw new IllegalArgumentException(DB_INCONSISTENCY + e);
    }
    return content;
}

Example 7 with TerminologyId

use of com.nedap.archie.rm.support.identification.TerminologyId in project ehrbase by ehrbase.

the class AuditDetailsAccess method getAsAuditDetails.

@Override
public AuditDetails getAsAuditDetails() {
    String systemId = getSystemId().toString();
    PartyProxy party = new PersistedPartyProxy(this).retrieve(getCommitter());
    DvDateTime time = new DvDateTime(getTimeCommitted().toLocalDateTime());
    DvCodedText changeType = new DvCodedText(getChangeType().getLiteral(), new CodePhrase(new TerminologyId("openehr"), Integer.toString(I_ConceptAccess.ContributionChangeType.valueOf(getChangeType().getLiteral().toUpperCase()).getCode())));
    DvText description = new DvText(getDescription());
    return new AuditDetails(systemId, party, time, changeType, description);
}

Example 8 with TerminologyId

use of com.nedap.archie.rm.support.identification.TerminologyId in project openEHR_SDK by ehrbase.

the class UnflattenerTest method testUnflattenEhrbaseBloodPressureSimpleDeV0.

@Test
public void testUnflattenEhrbaseBloodPressureSimpleDeV0() {
    Unflattener cut = new Unflattener(new TestDataTemplateProvider());
    EhrbaseBloodPressureSimpleDeV0Composition dto = buildEhrbaseBloodPressureSimpleDeV0();
    Composition rmObject = (Composition) cut.unflatten(dto);
    assertThat(rmObject).isNotNull();
    assertThat(rmObject.getContext().getParticipations()).extracting(p -> ((PartyIdentified) p.getPerformer()).getName(), p -> p.getFunction().getValue()).containsExactlyInAnyOrder(new Tuple("Test", "Pos1"), new Tuple("Test2", "Pos2"));
    assertThat(rmObject.getLanguage()).extracting(CodePhrase::getCodeString, c -> c.getTerminologyId().getValue()).containsExactly("de", "ISO_639-1");
    assertThat(rmObject.getArchetypeDetails().getTemplateId().getValue()).isEqualTo("ehrbase_blood_pressure_simple.de.v0");
    assertThat(rmObject.itemAtPath("/context/start_time/value")).isEqualTo(dto.getStartTimeValue());
    List<Object> observationList = rmObject.itemsAtPath("/content[openEHR-EHR-OBSERVATION.sample_blood_pressure.v1]");
    assertThat(observationList).size().isEqualTo(1);
    Observation observation = (Observation) observationList.get(0);
    DvCodedText expected = new DvCodedText("Fifth sound", new CodePhrase(new TerminologyId("local"), "at1012"));
    assertThat(observation.itemAtPath("/protocol[at0011]/items[at1010]/value")).isEqualTo(expected);
    assertThat(observation.getSubject()).isNotNull().extracting(Object::getClass).isEqualTo(PartySelf.class);
}

Example 9 with TerminologyId

use of com.nedap.archie.rm.support.identification.TerminologyId in project openEHR_SDK by ehrbase.

the class TermMappingTestOverwritten method testTermMappingFromJson.

@Override
@Test
public void testTermMappingFromJson() throws Exception {
    String template = this.getFileContent("/res/Demo Vitals.xml");
    String rawJson = this.getFileContent("/res/TmComposition.json");
    Composition unmarshal = new CanonicalJson().unmarshal(rawJson.replace("\"@class\"", "\"_type\""), Composition.class);
    String structuredJson = getFlatJson(template, FlatFormat.STRUCTURED).marshal(unmarshal);
    Composition actualComposition = getFlatJson(template, FlatFormat.STRUCTURED).unmarshal(structuredJson);
    List<TermMapping> termMappings = ((DvText) actualComposition.itemsAtPath("/content[openEHR-EHR-SECTION.ispek_dialog.v1]/items[openEHR-EHR-OBSERVATION.body_temperature-zn.v1]/data[at0002]/events/data/items[at0.63]/value").get(0)).getMappings();
    assertThat(termMappings).extracting(TermMapping::getMatch, t -> t.getTarget().getCodeString(), t -> t.getTarget().getTerminologyId().getValue(), TermMapping::getPurpose).containsExactlyInAnyOrder(new Tuple('=', "21794005", "SNOMED-CT", null), new Tuple('=', "W.11.7", "RTX", null));
    List<TermMapping> termMappings2 = ((DvText) actualComposition.itemsAtPath("/content[openEHR-EHR-SECTION.ispek_dialog.v1]/items[openEHR-EHR-OBSERVATION.body_temperature-zn.v1]/data[at0002]/events/state/items[at0041]/value").get(0)).getMappings();
    assertThat(termMappings2).extracting(TermMapping::getMatch, t -> t.getTarget().getCodeString(), t -> t.getTarget().getTerminologyId().getValue(), TermMapping::getPurpose).containsExactlyInAnyOrder(new Tuple('=', "99.1", "IAXA", new DvCodedText("Purpose 1", new CodePhrase(new TerminologyId("Purposes"), "p.0.63.1"))));
}

Example 10 with TerminologyId

use of com.nedap.archie.rm.support.identification.TerminologyId in project openEHR_SDK by ehrbase.

the class CodeSetAccessTest method testCodeSetAccess.

@Test
public void testCodeSetAccess() throws Exception {
    TerminologyInterface simpleTerminologyInterface = new SimpleTerminologyInterface("en");
    CodeSetAccess codeSetAccess = simpleTerminologyInterface.codeSetForId(OpenEHRCodeSetIdentifiers.INTEGRITY_CHECK_ALGORITHMS);
    assertEquals("openehr_integrity_check_algorithms", codeSetAccess.id());
    assertEquals(2, codeSetAccess.allCodes().size());
    assertTrue(codeSetAccess.hasCode(new CodePhrase(new TerminologyId("openehr_integrity_check_algorithms"), "SHA-1")));
}