use of com.sun.jersey.api.client.UniformInterfaceException in project ANNIS by korpling.
the class EmbeddedVisUI method showHtmlDoc.
private void showHtmlDoc(String corpus, String doc, Map<String, String[]> args) {
// do nothing for empty fragments
if (args == null || args.isEmpty()) {
return;
}
if (args.get("config") != null && args.get("config").length > 0) {
String config = args.get("config")[0];
// get input parameters
HTMLVis visualizer;
visualizer = new HTMLVis();
VisualizerInput input;
Visualizer visConfig;
visConfig = new Visualizer();
visConfig.setDisplayName(" ");
visConfig.setMappings("config:" + config);
visConfig.setNamespace(null);
visConfig.setType("htmldoc");
// create input
try {
input = DocBrowserController.createInput(corpus, doc, visConfig, false, null);
// create components, put in a panel
Panel viszr = visualizer.createComponent(input, null);
// Set the panel as the content of the UI
setContent(viszr);
} catch (UniformInterfaceException ex) {
displayMessage("Could not query document", "error was \"" + ex.getMessage() + "\" (detailed error is available in the server log-files)");
log.error("Could not get document for embedded visualizer", ex);
}
} else {
displayMessage("Missing required argument for visualizer \"htmldoc\"", "The following arguments are required:" + "<ul>" + "<li><code>config</code>: the internal config file to use (same as <a href=\"http://korpling.github.io/ANNIS/doc/classannis_1_1visualizers_1_1htmlvis_1_1HTMLVis.html\">\"config\" mapping parameter)</a></li>" + "</ul>");
}
}
use of com.sun.jersey.api.client.UniformInterfaceException in project ANNIS by korpling.
the class GeneralTextExporter method convertText.
@Override
public Exception convertText(String queryAnnisQL, int contextLeft, int contextRight, Set<String> corpora, List<String> keys, String argsAsString, boolean alignmc, WebResource annisResource, Writer out, EventBus eventBus, Map<String, CorpusConfig> corpusConfigs) {
try {
if (keys == null || keys.isEmpty()) {
// auto set
keys = new LinkedList<>();
keys.add("tok");
List<AnnisAttribute> attributes = new LinkedList<>();
for (String corpus : corpora) {
attributes.addAll(annisResource.path("corpora").path(urlPathEscape.escape(corpus)).path("annotations").queryParam("fetchvalues", "false").queryParam("onlymostfrequentvalues", "false").get(new AnnisAttributeListType()));
}
for (AnnisAttribute a : attributes) {
if (a.getName() != null) {
String[] namespaceAndName = a.getName().split(":", 2);
if (namespaceAndName.length > 1) {
keys.add(namespaceAndName[1]);
} else {
keys.add(namespaceAndName[0]);
}
}
}
}
Map<String, String> args = new HashMap<>();
for (String s : argsAsString.split("&|;")) {
String[] splitted = s.split("=", 2);
String key = splitted[0];
String val = "";
if (splitted.length > 1) {
val = splitted[1];
}
args.put(key, val);
}
int stepSize = 10;
// 1. Get all the matches as Salt ID
InputStream matchStream = annisResource.path("search/find/").queryParam("q", Helper.encodeJersey(queryAnnisQL)).queryParam("corpora", StringUtils.join(corpora, ",")).accept(MediaType.TEXT_PLAIN_TYPE).get(InputStream.class);
try (BufferedReader inReader = new BufferedReader(new InputStreamReader(matchStream, "UTF-8"))) {
WebResource subgraphRes = annisResource.path("search/subgraph");
MatchGroup currentMatches = new MatchGroup();
String currentLine;
int offset = 0;
// 2. iterate over all matches and get the sub-graph for a group of matches
while (!Thread.currentThread().isInterrupted() && (currentLine = inReader.readLine()) != null) {
Match match = Match.parseFromString(currentLine);
currentMatches.getMatches().add(match);
if (currentMatches.getMatches().size() >= stepSize) {
WebResource res = subgraphRes.queryParam("left", "" + contextLeft).queryParam("right", "" + contextRight);
if (args.containsKey("segmentation")) {
res = res.queryParam("segmentation", args.get("segmentation"));
}
SubgraphFilter filter = getSubgraphFilter();
if (filter != null) {
res = res.queryParam("filter", filter.name());
}
Stopwatch stopwatch = Stopwatch.createUnstarted();
stopwatch.start();
SaltProject p = res.post(SaltProject.class, currentMatches);
stopwatch.stop();
// export was fast enough
if (stopwatch.elapsed(TimeUnit.MILLISECONDS) < 500 && stepSize < 50) {
stepSize += 10;
}
convertText(LegacyGraphConverter.convertToResultSet(p), keys, args, out, offset - currentMatches.getMatches().size());
currentMatches.getMatches().clear();
if (eventBus != null) {
eventBus.post(offset + 1);
}
}
offset++;
}
if (Thread.interrupted()) {
return new InterruptedException("Exporter job was interrupted");
}
// query the left over matches
if (!currentMatches.getMatches().isEmpty()) {
WebResource res = subgraphRes.queryParam("left", "" + contextLeft).queryParam("right", "" + contextRight);
if (args.containsKey("segmentation")) {
res = res.queryParam("segmentation", args.get("segmentation"));
}
SubgraphFilter filter = getSubgraphFilter();
if (filter != null) {
res = res.queryParam("filter", filter.name());
}
SaltProject p = res.post(SaltProject.class, currentMatches);
convertText(LegacyGraphConverter.convertToResultSet(p), keys, args, out, offset - currentMatches.getMatches().size() - 1);
}
offset = 0;
}
out.append("\n");
out.append("\n");
out.append("finished");
return null;
} catch (AnnisQLSemanticsException | AnnisQLSyntaxException | AnnisCorpusAccessException | UniformInterfaceException | IOException ex) {
return ex;
}
}
use of com.sun.jersey.api.client.UniformInterfaceException in project ANNIS by korpling.
the class SaltBasedExporter method convertText.
@Override
public Exception convertText(String queryAnnisQL, int contextLeft, int contextRight, Set<String> corpora, List<String> keys, String argsAsString, boolean alignmc, WebResource annisResource, Writer out, EventBus eventBus, Map<String, CorpusConfig> corpusConfigs) {
CacheManager cacheManager = CacheManager.create();
try {
Cache cache = cacheManager.getCache("saltProjectsCache");
if (keys == null || keys.isEmpty()) {
// auto set
keys = new LinkedList<>();
keys.add("tok");
List<AnnisAttribute> attributes = new LinkedList<>();
for (String corpus : corpora) {
attributes.addAll(annisResource.path("corpora").path(urlPathEscape.escape(corpus)).path("annotations").queryParam("fetchvalues", "false").queryParam("onlymostfrequentvalues", "false").get(new AnnisAttributeListType()));
}
for (AnnisAttribute a : attributes) {
if (a.getName() != null) {
String[] namespaceAndName = a.getName().split(":", 2);
if (namespaceAndName.length > 1) {
keys.add(namespaceAndName[1]);
} else {
keys.add(namespaceAndName[0]);
}
}
}
}
Map<String, String> args = new HashMap<>();
for (String s : argsAsString.split("&|;")) {
String[] splitted = s.split("=", 2);
String key = splitted[0];
String val = "";
if (splitted.length > 1) {
val = splitted[1];
}
args.put(key, val);
}
int stepSize = 10;
int pCounter = 1;
Map<Integer, Integer> offsets = new HashMap<Integer, Integer>();
// 1. Get all the matches as Salt ID
InputStream matchStream = annisResource.path("search/find/").queryParam("q", Helper.encodeJersey(queryAnnisQL)).queryParam("corpora", StringUtils.join(corpora, ",")).accept(MediaType.TEXT_PLAIN_TYPE).get(InputStream.class);
// get node count for the query
WebResource resource = Helper.getAnnisWebResource();
List<QueryNode> nodes = resource.path("query/parse/nodes").queryParam("q", Helper.encodeJersey(queryAnnisQL)).get(new GenericType<List<QueryNode>>() {
});
Integer nodeCount = nodes.size();
try (BufferedReader inReader = new BufferedReader(new InputStreamReader(matchStream, "UTF-8"))) {
WebResource subgraphRes = annisResource.path("search/subgraph");
MatchGroup currentMatches = new MatchGroup();
String currentLine;
int offset = 1;
// 2. iterate over all matches and get the sub-graph for a group of matches
while (!Thread.currentThread().isInterrupted() && (currentLine = inReader.readLine()) != null) {
Match match = Match.parseFromString(currentLine);
currentMatches.getMatches().add(match);
if (currentMatches.getMatches().size() >= stepSize) {
WebResource res = subgraphRes.queryParam("left", "" + contextLeft).queryParam("right", "" + contextRight);
if (args.containsKey("segmentation")) {
res = res.queryParam("segmentation", args.get("segmentation"));
}
SubgraphFilter filter = getSubgraphFilter();
if (filter != null) {
res = res.queryParam("filter", filter.name());
}
Stopwatch stopwatch = Stopwatch.createStarted();
SaltProject p = res.post(SaltProject.class, currentMatches);
stopwatch.stop();
// export was fast enough
if (stopwatch.elapsed(TimeUnit.MILLISECONDS) < 500 && stepSize < 50) {
stepSize += 10;
}
convertSaltProject(p, keys, args, alignmc, offset - currentMatches.getMatches().size(), corpusConfigs, out, nodeCount);
offsets.put(pCounter, offset - currentMatches.getMatches().size());
cache.put(new Element(pCounter++, p));
currentMatches.getMatches().clear();
if (eventBus != null) {
eventBus.post(offset + 1);
}
}
offset++;
}
if (Thread.interrupted()) {
return new InterruptedException("Exporter job was interrupted");
}
// query the left over matches
if (!currentMatches.getMatches().isEmpty()) {
WebResource res = subgraphRes.queryParam("left", "" + contextLeft).queryParam("right", "" + contextRight);
if (args.containsKey("segmentation")) {
res = res.queryParam("segmentation", args.get("segmentation"));
}
SubgraphFilter filter = getSubgraphFilter();
if (filter != null) {
res = res.queryParam("filter", filter.name());
}
SaltProject p = res.post(SaltProject.class, currentMatches);
convertSaltProject(p, keys, args, alignmc, offset - currentMatches.getMatches().size() - 1, corpusConfigs, out, nodeCount);
offsets.put(pCounter, offset - currentMatches.getMatches().size() - 1);
cache.put(new Element(pCounter++, p));
}
offset = 1;
}
// build the list of ordered match numbers (ordering by occurrence in text)
getOrderedMatchNumbers();
@SuppressWarnings("unchecked") List<Integer> cacheKeys = cache.getKeys();
List<Integer> listOfKeys = new ArrayList<Integer>();
for (Integer key : cacheKeys) {
listOfKeys.add(key);
}
Collections.sort(listOfKeys);
for (Integer key : listOfKeys) {
SaltProject p = (SaltProject) cache.get(key).getObjectValue();
convertSaltProject(p, keys, args, alignmc, offsets.get(key), corpusConfigs, out, null);
}
out.append(System.lineSeparator());
return null;
} catch (AnnisQLSemanticsException | AnnisQLSyntaxException | AnnisCorpusAccessException | UniformInterfaceException | IOException | CacheException | IllegalStateException | ClassCastException ex) {
return ex;
} finally {
cacheManager.removalAll();
cacheManager.shutdown();
}
}
use of com.sun.jersey.api.client.UniformInterfaceException in project ANNIS by korpling.
the class WekaExporter method convertText.
@Override
public Exception convertText(String queryAnnisQL, int contextLeft, int contextRight, Set<String> corpora, List<String> keys, String argsAsString, boolean alignmc, WebResource annisResource, Writer out, EventBus eventBus, Map<String, CorpusConfig> corpusConfigs) {
try {
WebResource res = annisResource.path("search").path("matrix").queryParam("corpora", StringUtils.join(corpora, ",")).queryParam("q", Helper.encodeJersey(queryAnnisQL));
if (argsAsString.startsWith("metakeys=")) {
res = res.queryParam("metakeys", argsAsString.substring("metakeys".length() + 1));
}
try (InputStream result = res.get(InputStream.class)) {
IOUtils.copy(result, out);
}
out.flush();
return null;
} catch (UniformInterfaceException | ClientHandlerException | IOException ex) {
return ex;
}
}
use of com.sun.jersey.api.client.UniformInterfaceException in project ANNIS by korpling.
the class FlatQueryBuilder method getAvailableAnnotationNames.
public Set<String> getAvailableAnnotationNames() {
Set<String> result = new TreeSet<>();
WebResource service = Helper.getAnnisWebResource();
// get current corpus selection
Set<String> corpusSelection = cp.getState().getSelectedCorpora().getValue();
if (service != null) {
try {
List<AnnisAttribute> atts = new LinkedList<>();
for (String corpus : corpusSelection) {
atts.addAll(service.path("query").path("corpora").path(corpus).path("annotations").queryParam("fetchvalues", "false").queryParam("onlymostfrequentvalues", "false").get(new GenericType<List<AnnisAttribute>>() {
}));
}
for (AnnisAttribute a : atts) {
if (a.getType() == AnnisAttribute.Type.node) {
result.add(killNamespace(a.getName()));
}
}
} catch (ClientHandlerException ex) {
log.error(null, ex);
} catch (UniformInterfaceException ex) {
log.error(null, ex);
}
}
result.add("tok");
return result;
}
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