Examples with DomDriver com.thoughtworks.xstream.io.xml.DomDriver used on opensource projects

Example 31 with DomDriver

use of com.thoughtworks.xstream.io.xml.DomDriver in project GDSC-SMLM by aherbert.

the class ImageSource method fromXml.

/**
 * Create the image source from serialised XML.
 *
 * @param xml the xml
 * @return the image source
 * @see #toXml()
 */
public static ImageSource fromXml(String xml) {
    final XStream xs = new XStream(new DomDriver());
    try {
        xs.allowTypesByWildcard(new String[] { "uk.ac.sussex.gdsc.smlm.**" });
        xs.autodetectAnnotations(true);
        // Support package gdsc.smlm renamed to uk.ac.sussex.gdsc.smlm
        return (ImageSource) xs.fromXML(XStreamUtils.updateGdscPackageName(xml));
    } catch (final Exception ex) {
        Logger.getLogger(ImageSource.class.getName()).log(Level.SEVERE, "Failed to deserialise from XML", ex);
    }
    return null;
}

Example 32 with DomDriver

use of com.thoughtworks.xstream.io.xml.DomDriver in project GDSC-SMLM by aherbert.

the class PcPalmAnalysis method loadResults.

/**
 * Load all the results from a directory. File must have the XML suffix.
 *
 * @param results the results
 * @return the updated results
 */
private List<CorrelationResult> loadResults(final List<CorrelationResult> results) {
    if (getDirectory()) {
        final File[] fileList = (new File(settings.resultsDirectory)).listFiles((arg0, arg1) -> arg1.endsWith("xml"));
        if (fileList == null) {
            return results;
        }
        // New list
        final List<CorrelationResult> newResults = new ArrayList<>(results);
        int count = 0;
        for (int i = 0; i < fileList.length; i++) {
            final XStream xs = new XStream(new DomDriver());
            // to be removed after 1.5
            XStream.setupDefaultSecurity(xs);
            xs.allowTypes(new Class[] { CorrelationResult.class });
            if (fileList[i].isFile() && loadResult(newResults, xs, fileList[i].getPath())) {
                count++;
            }
        }
        if (count > 0) {
            Collections.sort(newResults, CorrelationResult::compare);
        }
        log("Loaded %d results", count);
        return newResults;
    }
    return results;
}