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Example 16 with ELKIBuilder

use of de.lmu.ifi.dbs.elki.utilities.ELKIBuilder in project elki by elki-project.

the class KMeansHybridLloydMacQueenTest method testKMeansHybridLloydMacQueen.

/**
 * Run KMeans with fixed parameters and compare the result to a golden
 * standard.
 */
@Test
public void testKMeansHybridLloydMacQueen() {
    Database db = makeSimpleDatabase(UNITTEST + "different-densities-2d-no-noise.ascii", 1000);
    Clustering<?> result = // 
    new ELKIBuilder<KMeansHybridLloydMacQueen<DoubleVector>>(KMeansHybridLloydMacQueen.class).with(KMeans.K_ID, // 
    5).with(KMeans.SEED_ID, // 
    7).build().run(db);
    testFMeasure(db, result, 0.998005);
    testClusterSizes(result, new int[] { 199, 200, 200, 200, 201 });
}
Also used : ELKIBuilder(de.lmu.ifi.dbs.elki.utilities.ELKIBuilder) Database(de.lmu.ifi.dbs.elki.database.Database) DoubleVector(de.lmu.ifi.dbs.elki.data.DoubleVector) AbstractClusterAlgorithmTest(de.lmu.ifi.dbs.elki.algorithm.clustering.AbstractClusterAlgorithmTest) Test(org.junit.Test)

Example 17 with ELKIBuilder

use of de.lmu.ifi.dbs.elki.utilities.ELKIBuilder in project elki by elki-project.

the class KMeansMacQueenTest method testKMeansMacQueen.

/**
 * Run KMeans with fixed parameters and compare the result to a golden
 * standard.
 */
@Test
public void testKMeansMacQueen() {
    Database db = makeSimpleDatabase(UNITTEST + "different-densities-2d-no-noise.ascii", 1000);
    Clustering<?> result = // 
    new ELKIBuilder<KMeansMacQueen<DoubleVector>>(KMeansMacQueen.class).with(KMeans.K_ID, // 
    5).with(KMeans.SEED_ID, // 
    7).build().run(db);
    testFMeasure(db, result, 0.998005);
    testClusterSizes(result, new int[] { 199, 200, 200, 200, 201 });
}
Also used : ELKIBuilder(de.lmu.ifi.dbs.elki.utilities.ELKIBuilder) Database(de.lmu.ifi.dbs.elki.database.Database) DoubleVector(de.lmu.ifi.dbs.elki.data.DoubleVector) AbstractClusterAlgorithmTest(de.lmu.ifi.dbs.elki.algorithm.clustering.AbstractClusterAlgorithmTest) Test(org.junit.Test)

Example 18 with ELKIBuilder

use of de.lmu.ifi.dbs.elki.utilities.ELKIBuilder in project elki by elki-project.

the class KMeansSortTest method testKMeansSort.

/**
 * Run KMeans with fixed parameters and compare the result to a golden
 * standard.
 */
@Test
public void testKMeansSort() {
    Database db = makeSimpleDatabase(UNITTEST + "different-densities-2d-no-noise.ascii", 1000);
    Clustering<?> result = // 
    new ELKIBuilder<KMeansSort<DoubleVector>>(KMeansSort.class).with(KMeans.K_ID, // 
    5).with(KMeans.SEED_ID, // 
    7).build().run(db);
    testFMeasure(db, result, 0.998005);
    testClusterSizes(result, new int[] { 199, 200, 200, 200, 201 });
}
Also used : ELKIBuilder(de.lmu.ifi.dbs.elki.utilities.ELKIBuilder) Database(de.lmu.ifi.dbs.elki.database.Database) DoubleVector(de.lmu.ifi.dbs.elki.data.DoubleVector) AbstractClusterAlgorithmTest(de.lmu.ifi.dbs.elki.algorithm.clustering.AbstractClusterAlgorithmTest) Test(org.junit.Test)

Example 19 with ELKIBuilder

use of de.lmu.ifi.dbs.elki.utilities.ELKIBuilder in project elki by elki-project.

the class FourCTest method testFourCResults.

/**
 * Run 4C with fixed parameters and compare the result to a golden standard.
 */
@Test
public void testFourCResults() {
    Database db = makeSimpleDatabase(UNITTEST + "hierarchical-3d2d1d.csv", 600);
    Clustering<Model> result = // 
    new ELKIBuilder<FourC<DoubleVector>>(FourC.class).with(DBSCAN.Parameterizer.EPSILON_ID, // 
    0.30).with(DBSCAN.Parameterizer.MINPTS_ID, // 
    50).with(LimitEigenPairFilter.Parameterizer.EIGENPAIR_FILTER_DELTA, // 
    0.5).with(FourC.Settings.Parameterizer.LAMBDA_ID, // 
    1).build().run(db);
    testFMeasure(db, result, 0.7052);
    testClusterSizes(result, new int[] { 218, 382 });
}
Also used : ELKIBuilder(de.lmu.ifi.dbs.elki.utilities.ELKIBuilder) Database(de.lmu.ifi.dbs.elki.database.Database) Model(de.lmu.ifi.dbs.elki.data.model.Model) DoubleVector(de.lmu.ifi.dbs.elki.data.DoubleVector) AbstractClusterAlgorithmTest(de.lmu.ifi.dbs.elki.algorithm.clustering.AbstractClusterAlgorithmTest) Test(org.junit.Test)

Example 20 with ELKIBuilder

use of de.lmu.ifi.dbs.elki.utilities.ELKIBuilder in project elki by elki-project.

the class GeneralizedDBSCANTest method testDBSCANOnSingleLinkDataset.

/**
 * Run Generalized DBSCAN with fixed parameters and compare the result to a
 * golden standard.
 */
@Test
public void testDBSCANOnSingleLinkDataset() {
    Database db = makeSimpleDatabase(UNITTEST + "single-link-effect.ascii", 638);
    Clustering<Model> result = // 
    new ELKIBuilder<>(GeneralizedDBSCAN.class).with(DBSCAN.Parameterizer.EPSILON_ID, // 
    11.5).with(DBSCAN.Parameterizer.MINPTS_ID, // 
    120).build().run(db);
    testFMeasure(db, result, 0.954382);
    testClusterSizes(result, new int[] { 11, 200, 203, 224 });
}
Also used : ELKIBuilder(de.lmu.ifi.dbs.elki.utilities.ELKIBuilder) Database(de.lmu.ifi.dbs.elki.database.Database) Model(de.lmu.ifi.dbs.elki.data.model.Model) AbstractClusterAlgorithmTest(de.lmu.ifi.dbs.elki.algorithm.clustering.AbstractClusterAlgorithmTest) Test(org.junit.Test)

Aggregations

ELKIBuilder (de.lmu.ifi.dbs.elki.utilities.ELKIBuilder)114 Test (org.junit.Test)111 Database (de.lmu.ifi.dbs.elki.database.Database)102 DoubleVector (de.lmu.ifi.dbs.elki.data.DoubleVector)75 AbstractClusterAlgorithmTest (de.lmu.ifi.dbs.elki.algorithm.clustering.AbstractClusterAlgorithmTest)73 OutlierResult (de.lmu.ifi.dbs.elki.result.outlier.OutlierResult)26 AbstractOutlierAlgorithmTest (de.lmu.ifi.dbs.elki.algorithm.outlier.AbstractOutlierAlgorithmTest)22 Model (de.lmu.ifi.dbs.elki.data.model.Model)11 AbstractDataSourceTest (de.lmu.ifi.dbs.elki.datasource.AbstractDataSourceTest)10 MultipleObjectsBundle (de.lmu.ifi.dbs.elki.datasource.bundle.MultipleObjectsBundle)10 MedoidModel (de.lmu.ifi.dbs.elki.data.model.MedoidModel)7 SubspaceModel (de.lmu.ifi.dbs.elki.data.model.SubspaceModel)5 InputStreamDatabaseConnection (de.lmu.ifi.dbs.elki.datasource.InputStreamDatabaseConnection)3 WeightedCovarianceMatrixBuilder (de.lmu.ifi.dbs.elki.math.linearalgebra.pca.WeightedCovarianceMatrixBuilder)3 InputStream (java.io.InputStream)3 CorrelationModel (de.lmu.ifi.dbs.elki.data.model.CorrelationModel)2 PercentageEigenPairFilter (de.lmu.ifi.dbs.elki.math.linearalgebra.pca.filter.PercentageEigenPairFilter)2 KolmogorovSmirnovTest (de.lmu.ifi.dbs.elki.math.statistics.tests.KolmogorovSmirnovTest)2 WelchTTest (de.lmu.ifi.dbs.elki.math.statistics.tests.WelchTTest)2 ArrayList (java.util.ArrayList)2