Examples with ListParameterization de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.ListParameterization used on opensource projects

Example 26 with ListParameterization

use of de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.ListParameterization in project elki by elki-project.

the class CoverTreeTest method testCovertree.

/**
 * Test {@link CoverTree} using a file based database connection.
 */
@Test
public void testCovertree() {
    ListParameterization metparams = new ListParameterization();
    metparams.addParameter(StaticArrayDatabase.Parameterizer.INDEX_ID, CoverTree.Factory.class);
    metparams.addParameter(CoverTree.Factory.Parameterizer.DISTANCE_FUNCTION_ID, EuclideanDistanceFunction.class);
    testExactEuclidean(metparams, CoverTree.CoverTreeKNNQuery.class, CoverTree.CoverTreeRangeQuery.class);
}

Example 27 with ListParameterization

use of de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.ListParameterization in project elki by elki-project.

the class MinimalisticMemoryKDTreeTest method testMinimalisticMemoryKDTree.

/**
 * Test {@link MinimalisticMemoryKDTree} using a file based database connection.
 */
@Test
public void testMinimalisticMemoryKDTree() {
    ListParameterization spatparams = new ListParameterization();
    spatparams.addParameter(StaticArrayDatabase.Parameterizer.INDEX_ID, MinimalisticMemoryKDTree.Factory.class);
    testExactEuclidean(spatparams, MinimalisticMemoryKDTree.KDTreeKNNQuery.class, MinimalisticMemoryKDTree.KDTreeRangeQuery.class);
}

Example 28 with ListParameterization

use of de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.ListParameterization in project elki by elki-project.

the class PartialVAFileTest method testPartialVAFile.

/**
 * Test {@link PartialVAFile} using a file based database connection.
 */
@Test
public void testPartialVAFile() {
    ListParameterization spatparams = new ListParameterization();
    spatparams.addParameter(StaticArrayDatabase.Parameterizer.INDEX_ID, PartialVAFile.Factory.class);
    spatparams.addParameter(PartialVAFile.Factory.PARTITIONS_ID, 4);
    testExactEuclidean(spatparams, PartialVAFile.PartialVAFileKNNQuery.class, PartialVAFile.PartialVAFileRangeQuery.class);
}

Example 29 with ListParameterization

use of de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.ListParameterization in project elki by elki-project.

the class TermFrequencyParserTest method testDBLPData.

@Test
public void testDBLPData() throws IOException {
    InputStream is = AbstractSimpleAlgorithmTest.open(DBLP_DATA);
    // Setup parser and data loading
    TermFrequencyParser<SparseDoubleVector> parser = new TermFrequencyParser<>(false, SparseDoubleVector.FACTORY);
    InputStreamDatabaseConnection dbc = new InputStreamDatabaseConnection(is, null, parser);
    ListParameterization config = new ListParameterization();
    config.addParameter(AbstractDatabase.Parameterizer.DATABASE_CONNECTION_ID, dbc);
    Database db = ClassGenericsUtil.parameterizeOrAbort(StaticArrayDatabase.class, config);
    if (config.hasUnusedParameters()) {
        fail("Unused parameters: " + config.getRemainingParameters());
    }
    if (config.hasErrors()) {
        config.logAndClearReportedErrors();
        fail("Parameterization errors.");
    }
    db.initialize();
    Relation<SparseNumberVector> rel = db.getRelation(TypeUtil.SPARSE_VECTOR_VARIABLE_LENGTH);
    // Get first three objects:
    DBIDIter iter = rel.iterDBIDs();
    SparseNumberVector v1 = rel.get(iter);
    iter.advance();
    SparseNumberVector v2 = rel.get(iter);
    iter.advance();
    SparseNumberVector v3 = rel.get(iter);
    // "Dense" euclidean distance:
    double euclid1_12 = EuclideanDistanceFunction.STATIC.distance(v1, v2);
    double euclid1_13 = EuclideanDistanceFunction.STATIC.distance(v1, v3);
    double euclid1_23 = EuclideanDistanceFunction.STATIC.distance(v2, v3);
    double euclid1_21 = EuclideanDistanceFunction.STATIC.distance(v2, v1);
    // Sparse euclidean distance:
    double euclid2_12 = SparseEuclideanDistanceFunction.STATIC.distance(v1, v2);
    double euclid2_13 = SparseEuclideanDistanceFunction.STATIC.distance(v1, v3);
    double euclid2_23 = SparseEuclideanDistanceFunction.STATIC.distance(v2, v3);
    double euclid2_21 = SparseEuclideanDistanceFunction.STATIC.distance(v2, v1);
    // (Auto-switching) angular distance:
    double arccos_12 = ArcCosineDistanceFunction.STATIC.distance(v1, v2);
    double arccos_13 = ArcCosineDistanceFunction.STATIC.distance(v1, v3);
    double arccos_23 = ArcCosineDistanceFunction.STATIC.distance(v2, v3);
    double arccos_21 = ArcCosineDistanceFunction.STATIC.distance(v2, v1);
    assertEquals("Euclidean self-distance is not 0.", 0., EuclideanDistanceFunction.STATIC.distance(v1, v1), Double.MIN_VALUE);
    assertEquals("Sparse Euclidean self-distance is not 0.", 0., SparseEuclideanDistanceFunction.STATIC.distance(v1, v1), Double.MIN_VALUE);
    assertEquals("Arccos self-distance is not 0.", 0., ArcCosineDistanceFunction.STATIC.distance(v1, v1), Double.MIN_VALUE);
    assertEquals("Euclidean distance not symmetric.", euclid1_12, euclid1_21, Double.MIN_VALUE);
    assertEquals("Sparse Euclidean distance not symmetric.", euclid2_12, euclid2_21, Double.MIN_VALUE);
    assertEquals("Arccos distance not symmetric.", arccos_12, arccos_21, Double.MIN_VALUE);
    assertEquals("Euclidean distance 1-2 not as expected.", 684.4165398352088, euclid1_12, 1e-20);
    assertEquals("Sparse Euclidean distance 1-2 not as expected.", 684.4165398352088, euclid2_12, 1e-20);
    assertEquals("Arccos distance 1-2 not as expected.", 0.1901934493141418, arccos_12, 1e-20);
    assertEquals("Euclidean distance 1-3 not as expected.", 654.9862593978594, euclid1_13, 1e-20);
    assertEquals("Sparse Euclidean distance 1-3 not as expected.", 654.9862593978594, euclid2_13, 1e-20);
    assertEquals("Arccos distance 1-3 not as expected.", 0.18654347641726046, arccos_13, 1e-20);
    assertEquals("Euclidean distance 2-3 not as expected.", 231.78653972998518, euclid1_23, 1e-20);
    assertEquals("Sparse Euclidean distance 2-3 not as expected.", 231.78653972998518, euclid2_23, 1e-20);
    assertEquals("Arccos distance 2-3 not as expected.", 0.11138352337990569, arccos_23, 1e-20);
}

Example 30 with ListParameterization

use of de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.ListParameterization in project elki by elki-project.

the class KNNJoinTest method testKNNJoinDeLiCluTreeMini.

/**
 * Test {@link DeLiCluTree} using a file based database connection.
 */
@Test
public void testKNNJoinDeLiCluTreeMini() {
    ListParameterization spatparams = new ListParameterization();
    spatparams.addParameter(StaticArrayDatabase.Parameterizer.INDEX_ID, DeLiCluTreeFactory.class);
    spatparams.addParameter(AbstractPageFileFactory.Parameterizer.PAGE_SIZE_ID, 200);
    doKNNJoin(spatparams);
}