Examples with AnnotationLayer de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer used on opensource projects

Example 16 with AnnotationLayer

use of de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer in project webanno by webanno.

the class ExportUtil method exportProjectSettings.

public static de.tudarmstadt.ukp.clarin.webanno.export.model.Project exportProjectSettings(AnnotationSchemaService annotationService, Optional<AutomationService> automationService, DocumentService documentService, ProjectService projectService, Project aProject, File aProjectSettings, File aExportTempDir) {
    de.tudarmstadt.ukp.clarin.webanno.export.model.Project exProjekt = new de.tudarmstadt.ukp.clarin.webanno.export.model.Project();
    exProjekt.setDescription(aProject.getDescription());
    exProjekt.setName(aProject.getName());
    // In older versions of WebAnno, the mode was an enum which was serialized as upper-case
    // during export but as lower-case in the database. This is compensating for this case.
    exProjekt.setMode(StringUtils.upperCase(aProject.getMode(), Locale.US));
    exProjekt.setScriptDirection(aProject.getScriptDirection());
    exProjekt.setVersion(aProject.getVersion());
    exProjekt.setDisableExport(aProject.isDisableExport());
    exProjekt.setCreated(aProject.getCreated());
    exProjekt.setUpdated(aProject.getUpdated());
    List<de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationLayer> exLayers = new ArrayList<>();
    // Store map of layer and its equivalent exLayer so that the attach type is attached later
    Map<AnnotationLayer, de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationLayer> layerToExLayers = new HashMap<>();
    // Store map of feature and its equivalent exFeature so that the attach feature is attached
    // later
    Map<AnnotationFeature, de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationFeature> featureToExFeatures = new HashMap<>();
    for (AnnotationLayer layer : annotationService.listAnnotationLayer(aProject)) {
        exLayers.add(ImportUtil.exportLayerDetails(layerToExLayers, featureToExFeatures, layer, annotationService));
    }
    // exported feature
    for (AnnotationLayer layer : layerToExLayers.keySet()) {
        if (layer.getAttachType() != null) {
            layerToExLayers.get(layer).setAttachType(layerToExLayers.get(layer.getAttachType()));
        }
        if (layer.getAttachFeature() != null) {
            layerToExLayers.get(layer).setAttachFeature(featureToExFeatures.get(layer.getAttachFeature()));
        }
    }
    exProjekt.setLayers(exLayers);
    List<ExportedTagSet> extTagSets = new ArrayList<>();
    for (TagSet tagSet : annotationService.listTagSets(aProject)) {
        ExportedTagSet exTagSet = new ExportedTagSet();
        exTagSet.setCreateTag(tagSet.isCreateTag());
        exTagSet.setDescription(tagSet.getDescription());
        exTagSet.setLanguage(tagSet.getLanguage());
        exTagSet.setName(tagSet.getName());
        List<ExportedTag> exTags = new ArrayList<>();
        for (Tag tag : annotationService.listTags(tagSet)) {
            ExportedTag exTag = new ExportedTag();
            exTag.setDescription(tag.getDescription());
            exTag.setName(tag.getName());
            exTags.add(exTag);
        }
        exTagSet.setTags(exTags);
        extTagSets.add(exTagSet);
    }
    exProjekt.setTagSets(extTagSets);
    List<SourceDocument> sourceDocuments = new ArrayList<>();
    List<AnnotationDocument> annotationDocuments = new ArrayList<>();
    // add source documents to a project
    List<de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument> documents = documentService.listSourceDocuments(aProject);
    for (de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument sourceDocument : documents) {
        SourceDocument exDocument = new SourceDocument();
        exDocument.setFormat(sourceDocument.getFormat());
        exDocument.setName(sourceDocument.getName());
        exDocument.setState(sourceDocument.getState());
        exDocument.setTimestamp(sourceDocument.getTimestamp());
        exDocument.setSentenceAccessed(sourceDocument.getSentenceAccessed());
        exDocument.setCreated(sourceDocument.getCreated());
        exDocument.setUpdated(sourceDocument.getUpdated());
        // add annotation document to Project
        for (de.tudarmstadt.ukp.clarin.webanno.model.AnnotationDocument annotationDocument : documentService.listAnnotationDocuments(sourceDocument)) {
            AnnotationDocument annotationDocumentToExport = new AnnotationDocument();
            annotationDocumentToExport.setName(annotationDocument.getName());
            annotationDocumentToExport.setState(annotationDocument.getState());
            annotationDocumentToExport.setUser(annotationDocument.getUser());
            annotationDocumentToExport.setTimestamp(annotationDocument.getTimestamp());
            annotationDocumentToExport.setSentenceAccessed(annotationDocument.getSentenceAccessed());
            annotationDocumentToExport.setCreated(annotationDocument.getCreated());
            annotationDocumentToExport.setUpdated(annotationDocument.getUpdated());
            annotationDocuments.add(annotationDocumentToExport);
        }
        sourceDocuments.add(exDocument);
    }
    exProjekt.setSourceDocuments(sourceDocuments);
    exProjekt.setAnnotationDocuments(annotationDocuments);
    if (automationService.isPresent()) {
        List<de.tudarmstadt.ukp.clarin.webanno.export.model.TrainingDocument> trainDocuments = new ArrayList<>();
        List<TrainingDocument> trainingDocuments = automationService.get().listTrainingDocuments(aProject);
        Map<String, de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationFeature> fm = new HashMap<>();
        for (de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationFeature f : featureToExFeatures.values()) {
            fm.put(f.getName(), f);
        }
        for (TrainingDocument trainingDocument : trainingDocuments) {
            de.tudarmstadt.ukp.clarin.webanno.export.model.TrainingDocument exDocument = new de.tudarmstadt.ukp.clarin.webanno.export.model.TrainingDocument();
            exDocument.setFormat(trainingDocument.getFormat());
            exDocument.setName(trainingDocument.getName());
            exDocument.setState(trainingDocument.getState());
            exDocument.setTimestamp(trainingDocument.getTimestamp());
            exDocument.setSentenceAccessed(trainingDocument.getSentenceAccessed());
            if (trainingDocument.getFeature() != null) {
                exDocument.setFeature(fm.get(trainingDocument.getFeature().getName()));
            }
            trainDocuments.add(exDocument);
        }
        exProjekt.setTrainingDocuments(trainDocuments);
    } else {
        exProjekt.setTrainingDocuments(new ArrayList<>());
    }
    List<ProjectPermission> projectPermissions = new ArrayList<>();
    // add project permissions to the project
    for (User user : projectService.listProjectUsersWithPermissions(aProject)) {
        for (de.tudarmstadt.ukp.clarin.webanno.model.ProjectPermission permission : projectService.listProjectPermissionLevel(user, aProject)) {
            ProjectPermission permissionToExport = new ProjectPermission();
            permissionToExport.setLevel(permission.getLevel());
            permissionToExport.setUser(user.getUsername());
            projectPermissions.add(permissionToExport);
        }
    }
    exProjekt.setProjectPermissions(projectPermissions);
    // export automation Mira template
    if (automationService.isPresent()) {
        List<de.tudarmstadt.ukp.clarin.webanno.export.model.MiraTemplate> exTemplates = new ArrayList<>();
        for (MiraTemplate template : automationService.get().listMiraTemplates(aProject)) {
            de.tudarmstadt.ukp.clarin.webanno.export.model.MiraTemplate exTemplate = new de.tudarmstadt.ukp.clarin.webanno.export.model.MiraTemplate();
            exTemplate.setAnnotateAndPredict(template.isAnnotateAndRepeat());
            exTemplate.setAutomationStarted(template.isAutomationStarted());
            exTemplate.setCurrentLayer(template.isCurrentLayer());
            exTemplate.setResult(template.getResult());
            exTemplate.setTrainFeature(featureToExFeatures.get(template.getTrainFeature()));
            if (template.getOtherFeatures().size() > 0) {
                Set<de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationFeature> exOtherFeatures = new HashSet<>();
                for (AnnotationFeature feature : template.getOtherFeatures()) {
                    exOtherFeatures.add(featureToExFeatures.get(feature));
                }
                exTemplate.setOtherFeatures(exOtherFeatures);
            }
            exTemplates.add(exTemplate);
        }
        exProjekt.setMiraTemplates(exTemplates);
    } else {
        exProjekt.setMiraTemplates(new ArrayList<>());
    }
    return exProjekt;
}

Example 17 with AnnotationLayer

use of de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer in project webanno by webanno.

the class ImportUtil method createV1Layer.

private static Map<String, AnnotationFeature> createV1Layer(Project aProject, de.tudarmstadt.ukp.clarin.webanno.export.model.Project aImportedProjectSetting, AnnotationSchemaService aAnnotationService, User aUser) throws IOException {
    Map<String, AnnotationFeature> featuresMap = new HashMap<>();
    Map<de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationLayer, AnnotationLayer> layersMap = new HashMap<>();
    for (de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationLayer exLayer : aImportedProjectSetting.getLayers()) {
        if (aAnnotationService.existsLayer(exLayer.getName(), exLayer.getType(), aProject)) {
            AnnotationLayer layer = aAnnotationService.getLayer(exLayer.getName(), aProject);
            setLayer(aAnnotationService, layer, exLayer, aProject, aUser);
            layersMap.put(exLayer, layer);
            for (de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationFeature exfeature : exLayer.getFeatures()) {
                if (aAnnotationService.existsFeature(exfeature.getName(), layer)) {
                    AnnotationFeature feature = aAnnotationService.getFeature(exfeature.getName(), layer);
                    setFeature(aAnnotationService, feature, exfeature, aProject, aUser);
                    featuresMap.put(exfeature.getName(), feature);
                    continue;
                }
                AnnotationFeature feature = new AnnotationFeature();
                feature.setLayer(layer);
                setFeature(aAnnotationService, feature, exfeature, aProject, aUser);
                featuresMap.put(exfeature.getName(), feature);
            }
        } else {
            AnnotationLayer layer = new AnnotationLayer();
            setLayer(aAnnotationService, layer, exLayer, aProject, aUser);
            layersMap.put(exLayer, layer);
            for (de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationFeature exfeature : exLayer.getFeatures()) {
                AnnotationFeature feature = new AnnotationFeature();
                feature.setLayer(layer);
                setFeature(aAnnotationService, feature, exfeature, aProject, aUser);
                featuresMap.put(exfeature.getName(), feature);
            }
        }
    }
    for (ExportedTagSet exTagSet : aImportedProjectSetting.getTagSets()) {
        TagSet tagSet = new TagSet();
        createTagSet(tagSet, exTagSet, aProject, aUser, aAnnotationService);
    }
    for (de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationLayer exLayer : aImportedProjectSetting.getLayers()) {
        if (exLayer.getAttachType() != null) {
            AnnotationLayer layer = aAnnotationService.getLayer(exLayer.getName(), aProject);
            AnnotationLayer attachLayer = aAnnotationService.getLayer(exLayer.getAttachType().getName(), aProject);
            layer.setAttachType(attachLayer);
            aAnnotationService.createLayer(layersMap.get(exLayer));
        }
        if (exLayer.getAttachFeature() != null) {
            layersMap.get(exLayer).setAttachFeature(featuresMap.get(exLayer.getAttachFeature().getName()));
            aAnnotationService.createLayer(layersMap.get(exLayer));
        }
        for (de.tudarmstadt.ukp.clarin.webanno.export.model.AnnotationFeature eXFeature : exLayer.getFeatures()) {
            if (eXFeature.getTagSet() != null) {
                featuresMap.get(eXFeature.getName()).setTagset(aAnnotationService.getTagSet(eXFeature.getTagSet().getName(), aProject));
            }
        }
    }
    return featuresMap;
}

Example 18 with AnnotationLayer

use of de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer in project webanno by webanno.

the class LegacyProjectInitializer method createNeLayer.

private void createNeLayer(Project aProject, TagSet aTagSet) throws IOException {
    AnnotationLayer neLayer = new AnnotationLayer(NamedEntity.class.getName(), "Named entity", SPAN_TYPE, aProject, true);
    neLayer.setAllowStacking(true);
    neLayer.setMultipleTokens(true);
    neLayer.setLockToTokenOffset(false);
    annotationSchemaService.createLayer(neLayer);
    annotationSchemaService.createFeature(new AnnotationFeature(aProject, neLayer, "value", "value", CAS.TYPE_NAME_STRING, "Named entity type", aTagSet));
}

Example 19 with AnnotationLayer

use of de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer in project webanno by webanno.

the class LegacyProjectInitializer method createTokenLayer.

private AnnotationLayer createTokenLayer(Project aProject) throws IOException {
    AnnotationLayer tokenLayer = new AnnotationLayer(Token.class.getName(), "Token", SPAN_TYPE, aProject, true);
    annotationSchemaService.createLayer(tokenLayer);
    return tokenLayer;
}

Example 20 with AnnotationLayer

use of de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer in project webanno by webanno.

the class LegacyProjectInitializer method createLemmaLayer.

private void createLemmaLayer(Project aProject) throws IOException {
    AnnotationLayer tokenLayer = annotationSchemaService.getLayer(Token.class.getName(), aProject);
    AnnotationFeature tokenLemmaFeature = new AnnotationFeature(aProject, tokenLayer, "lemma", "lemma", Lemma.class.getName());
    annotationSchemaService.createFeature(tokenLemmaFeature);
    AnnotationLayer lemmaLayer = new AnnotationLayer(Lemma.class.getName(), "Lemma", SPAN_TYPE, aProject, true);
    lemmaLayer.setAttachType(tokenLayer);
    lemmaLayer.setAttachFeature(tokenLemmaFeature);
    annotationSchemaService.createLayer(lemmaLayer);
    AnnotationFeature lemmaFeature = new AnnotationFeature();
    lemmaFeature.setDescription("lemma Annotation");
    lemmaFeature.setName("value");
    lemmaFeature.setType(CAS.TYPE_NAME_STRING);
    lemmaFeature.setProject(aProject);
    lemmaFeature.setUiName("Lemma");
    lemmaFeature.setLayer(lemmaLayer);
    annotationSchemaService.createFeature(lemmaFeature);
}