Examples with SourceDocument de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument used on opensource projects

Example 21 with SourceDocument

use of de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument in project webanno by webanno.

the class CurationPage method actionFinishDocument.

private void actionFinishDocument(AjaxRequestTarget aTarget) {
    finishDocumentDialog.setConfirmAction((aCallbackTarget) -> {
        ensureRequiredFeatureValuesSet(aCallbackTarget, getEditorCas());
        AnnotatorState state = getModelObject();
        SourceDocument sourceDocument = state.getDocument();
        if (SourceDocumentState.CURATION_FINISHED.equals(sourceDocument.getState())) {
            documentService.transitionSourceDocumentState(sourceDocument, CURATION_FINISHED_TO_CURATION_IN_PROGRESS);
        } else {
            documentService.transitionSourceDocumentState(sourceDocument, CURATION_IN_PROGRESS_TO_CURATION_FINISHED);
        }
        aCallbackTarget.add(finishDocumentIcon);
        aCallbackTarget.add(finishDocumentLink);
        aCallbackTarget.add(curationPanel.editor);
        aCallbackTarget.add(remergeDocumentLink);
    });
    finishDocumentDialog.show(aTarget);
}

Example 22 with SourceDocument

use of de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument in project webanno by webanno.

the class SuggestionViewPanel method mergeArc.

private void mergeArc(IRequestParameters aRequest, UserAnnotationSegment aCurationUserSegment, JCas aJcas) throws AnnotationException, IOException, UIMAException, ClassNotFoundException {
    int addressOriginClicked = aRequest.getParameterValue(PARAM_ORIGIN_SPAN_ID).toInt();
    int addressTargetClicked = aRequest.getParameterValue(PARAM_TARGET_SPAN_ID).toInt();
    String arcType = removePrefix(aRequest.getParameterValue(PARAM_TYPE).toString());
    String fsArcaddress = aRequest.getParameterValue(PARAM_ARC_ID).toString();
    AnnotatorState bModel = aCurationUserSegment.getAnnotatorState();
    SourceDocument sourceDocument = bModel.getDocument();
    // for correction and automation, the lower panel is the clickedJcase, from the suggestions
    JCas clickedJCas;
    if (!aCurationUserSegment.getAnnotatorState().getMode().equals(Mode.CURATION)) {
        clickedJCas = correctionDocumentService.readCorrectionCas(sourceDocument);
    } else {
        User user = userRepository.get(aCurationUserSegment.getUsername());
        AnnotationDocument clickedAnnotationDocument = documentService.getAnnotationDocument(sourceDocument, user);
        clickedJCas = getJCas(bModel, clickedAnnotationDocument);
    }
    long layerId = TypeUtil.getLayerId(arcType);
    AnnotationLayer layer = annotationService.getLayer(layerId);
    TypeAdapter adapter = annotationService.getAdapter(layer);
    int address = Integer.parseInt(fsArcaddress.split("\\.")[0]);
    AnnotationFS clickedFS = selectByAddr(clickedJCas, address);
    if (isCorefType(clickedFS)) {
        throw new AnnotationException(" Coreference Annotation not supported in curation");
    }
    MergeCas.addArcAnnotation(adapter, aJcas, addressOriginClicked, addressTargetClicked, fsArcaddress, clickedJCas, clickedFS);
    writeEditorCas(bModel, aJcas);
    int sentenceNumber = getSentenceNumber(clickedJCas, clickedFS.getBegin());
    bModel.setFocusUnitIndex(sentenceNumber);
    // Update timestamp
    bModel.getDocument().setSentenceAccessed(sentenceNumber);
    if (bModel.getPreferences().isScrollPage()) {
        Sentence sentence = selectSentenceAt(aJcas, bModel.getFirstVisibleUnitBegin(), bModel.getFirstVisibleUnitEnd());
        sentence = findWindowStartCenteringOnSelection(aJcas, sentence, clickedFS.getBegin(), bModel.getProject(), bModel.getDocument(), bModel.getPreferences().getWindowSize());
        bModel.setFirstVisibleUnit(sentence);
    }
}

Example 23 with SourceDocument

use of de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument in project webanno by webanno.

the class SuggestionViewPanel method mergeSpan.

private void mergeSpan(IRequestParameters aRequest, UserAnnotationSegment aCurationUserSegment, JCas aJcas) throws AnnotationException, UIMAException, ClassNotFoundException, IOException {
    User user = userRepository.get(aCurationUserSegment.getUsername());
    SourceDocument sourceDocument = aCurationUserSegment.getAnnotatorState().getDocument();
    AnnotationDocument clickedAnnotationDocument = documentService.getAnnotationDocument(sourceDocument, user);
    Integer address = aRequest.getParameterValue(PARAM_ID).toInteger();
    String spanType = removePrefix(aRequest.getParameterValue(PARAM_TYPE).toString());
    createSpan(spanType, aCurationUserSegment.getAnnotatorState(), aJcas, clickedAnnotationDocument, address);
}

Example 24 with SourceDocument

use of de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument in project webanno by webanno.

the class TwoPairedKappaTest method testTwoUserDiffArcAndSpanAnnotation.

@Test
public void testTwoUserDiffArcAndSpanAnnotation() throws Exception {
    Map<User, List<SourceDocument>> userDocs = new HashMap<>();
    userDocs.put(user1, asList(document));
    userDocs.put(user2, asList(document));
    Map<User, JCas> userCases = new HashMap<>();
    userCases.put(user1, kappatestCas.getJCas());
    userCases.put(user2, kappaspanarcdiff.getJCas());
    Map<SourceDocument, Map<User, JCas>> documentJCases = new HashMap<>();
    documentJCases.put(document, userCases);
    // Check against new impl
    DiffResult diff = CasDiff2.doDiff(Dependency.class, new ArcDiffAdapter(Dependency.class, "Dependent", "Governor", "DependencyType"), LinkCompareBehavior.LINK_TARGET_AS_LABEL, convert(userCases));
    AgreementResult agreement = AgreementUtils.getCohenKappaAgreement(diff, Dependency.class.getName(), "DependencyType", convert(userCases));
    // Asserts
    System.out.printf("Agreement: %s%n", agreement.toString());
    diff.print(System.out);
    AgreementUtils.dumpAgreementStudy(System.out, agreement);
    assertEquals(0.86153d, agreement.getAgreement(), 0.00001d);
    assertEquals(9, diff.size());
    assertEquals(1, diff.getDifferingConfigurationSets().size());
    assertEquals(0, diff.getIncompleteConfigurationSets().size());
}

Example 25 with SourceDocument

use of de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument in project webanno by webanno.

the class TwoPairedKappaTest method testTwoUserSameAnnotation.

@Test
public void testTwoUserSameAnnotation() throws Exception {
    Map<User, List<SourceDocument>> userDocs = new HashMap<>();
    userDocs.put(user1, asList(document));
    userDocs.put(user2, asList(document));
    Map<User, JCas> userCases = new HashMap<>();
    userCases.put(user1, kappatestCas.getJCas());
    userCases.put(user2, kappatestCas.getJCas());
    Map<SourceDocument, Map<User, JCas>> documentJCases = new HashMap<>();
    documentJCases.put(document, userCases);
    // Check against new impl
    DiffResult diff = CasDiff2.doDiff(POS.class, new SpanDiffAdapter(POS.class, "PosValue"), LinkCompareBehavior.LINK_TARGET_AS_LABEL, convert(userCases));
    AgreementResult agreement = AgreementUtils.getCohenKappaAgreement(diff, POS.class.getName(), "PosValue", convert(userCases));
    // Asserts
    System.out.printf("Agreement: %s%n", agreement.toString());
    diff.print(System.out);
    assertEquals(1.0d, agreement.getAgreement(), 0.000001);
    assertEquals(9, diff.size());
    assertEquals(0, diff.getDifferingConfigurationSets().size());
    assertEquals(0, diff.getIncompleteConfigurationSets().size());
}