Examples with TreeIntervals dr.evolution.coalescent.TreeIntervals used on opensource projects

Example 6 with TreeIntervals

use of dr.evolution.coalescent.TreeIntervals in project beast-mcmc by beast-dev.

the class GaussianProcessMultilocusSkytrackLikelihood method makeTreeIntervalList.

//                  OK
private void makeTreeIntervalList(List<Tree> treeList, boolean add) {
    if (intervalsList == null) {
        intervalsList = new ArrayList<TreeIntervals>();
    } else {
        intervalsList.clear();
    }
    for (Tree tree : treeList) {
        numIntervals += tree.getExternalNodeCount();
        intervalsList.add(new TreeIntervals(tree));
        if (add && tree instanceof TreeModel) {
            addModel((TreeModel) tree);
        }
    }
}