Examples with ContinuousVariable edu.cmu.tetrad.data.ContinuousVariable used on opensource projects

Example 91 with ContinuousVariable

use of edu.cmu.tetrad.data.ContinuousVariable in project tetrad by cmu-phil.

the class TestDagScorer method test1.

@Test
public void test1() {
    RandomUtil.getInstance().setSeed(492839483L);
    List<Node> nodes = new ArrayList<>();
    for (int i = 0; i < 10; i++) {
        nodes.add(new ContinuousVariable("X" + (i + 1)));
    }
    Graph dag = new Dag(GraphUtils.randomGraph(nodes, 0, 10, 30, 15, 15, false));
    SemPm pm = new SemPm(dag);
    SemIm im = new SemIm(pm);
    DataSet data = im.simulateData(1000, false);
    GraphUtils.replaceNodes(dag, data.getVariables());
    SemEstimator est = new SemEstimator(data, pm);
    SemIm estSem = est.estimate();
    double fml = estSem.getScore();
    assertEquals(0.0369, fml, 0.001);
    dag = GraphUtils.replaceNodes(dag, data.getVariables());
    Scorer scorer = new DagScorer(data);
    double _fml = scorer.score(dag);
    assertEquals(0.0358, _fml, 0.001);
    double bicScore = scorer.getBicScore();
    assertEquals(-205, bicScore, 1);
    int dof = scorer.getDof();
    assertEquals(35, dof);
    int numFreeParams = scorer.getNumFreeParams();
    assertEquals(20, numFreeParams);
}