Examples with TreeDrawerNode edu.ucsf.rbvi.clusterMaker2.internal.treeview.TreeDrawerNode used on opensource projects

Example 11 with TreeDrawerNode

use of edu.ucsf.rbvi.clusterMaker2.internal.treeview.TreeDrawerNode in project clusterMaker2 by RBVI.

the class DendroView method updateATRDrawer.

/**
 * Updates the ATRDrawer to reflect changes in the DataMode
 * array order; rebuilds the TreeDrawerNode tree.
 * @param selectedID ID of the node selected before a change in
 *                   tree structure was made. This node is then
 *                   found and reselected after the ATR tree is rebuilt.
 */
private void updateATRDrawer(String selectedID) {
    try {
        TVModel tvmodel = (TVModel) getDataModel();
        invertedTreeDrawer.setData(tvmodel.getAtrHeaderInfo(), tvmodel.getArrayHeaderInfo());
        HeaderInfo trHeaderInfo = tvmodel.getAtrHeaderInfo();
        if (trHeaderInfo.getIndex("NODECOLOR") >= 0) {
            TreeColorer.colorUsingHeader(invertedTreeDrawer.getRootNode(), trHeaderInfo, trHeaderInfo.getIndex("NODECOLOR"));
        }
    } catch (DendroException e) {
        // LogPanel.println("Had problem setting up the array tree : " + e.getMessage());
        // e.printStackTrace();
        Box mismatch = new Box(BoxLayout.Y_AXIS);
        mismatch.add(new JLabel(e.getMessage()));
        mismatch.add(new JLabel("Perhaps there is a mismatch between your ATR and CDT files?"));
        mismatch.add(new JLabel("Ditching Array Tree, since it's lame."));
        JOptionPane.showMessageDialog(viewFrame, mismatch, "Tree Construction Error", JOptionPane.ERROR_MESSAGE);
        atrview.setEnabled(false);
        atrzview.setEnabled(false);
        try {
            invertedTreeDrawer.setData(null, null);
        } catch (DendroException ex) {
        }
    }
    TreeDrawerNode arrayNode = invertedTreeDrawer.getRootNode().findNode(selectedID);
    arraySelection.setSelectedNode(arrayNode.getId());
    atrzview.setSelectedNode(arrayNode);
    atrview.setSelectedNode(arrayNode);
    arraySelection.notifyObservers();
    invertedTreeDrawer.notifyObservers();
}

Example 12 with TreeDrawerNode

use of edu.ucsf.rbvi.clusterMaker2.internal.treeview.TreeDrawerNode in project clusterMaker2 by RBVI.

the class GTRView method selectLeft.

private void selectLeft() {
    if (selectedNode.isLeaf())
        return;
    TreeDrawerNode current = selectedNode;
    selectedNode = current.getLeft();
    drawer.paintSingle(offscreenGraphics, getXScaleEq(), getYScaleEq(), destRect, current, false);
    drawer.paintSubtree(offscreenGraphics, getXScaleEq(), getYScaleEq(), destRect, current.getRight(), false);
    synchMap();
    repaint();
}

Example 13 with TreeDrawerNode

use of edu.ucsf.rbvi.clusterMaker2.internal.treeview.TreeDrawerNode in project clusterMaker2 by RBVI.

the class GTRView method update.

/**
 * expect updates to come from map, geneSelection and drawer
 */
public void update(Observable o, Object arg) {
    if (o == map) {
        // System.out.println("Got an update from map");
        offscreenValid = false;
        repaint();
    } else if (o == drawer) {
        // System.out.println("Got an update from drawer");
        offscreenValid = false;
        repaint();
    } else if (o == geneSelection) {
        TreeDrawerNode cand = null;
        if (geneSelection.getNSelectedIndexes() > 0) {
            // This clause selects the array node if only a single array is selected.
            if (geneSelection.getMinIndex() == geneSelection.getMaxIndex()) {
                cand = drawer.getLeaf(geneSelection.getMinIndex());
            // this clause selects the root node if all genes are selected.
            } else if ((geneSelection.getMinIndex() == map.getMinIndex()) && (geneSelection.getMaxIndex() == map.getMaxIndex())) {
                cand = drawer.getRootNode();
            }
        }
        if ((cand != null) && (cand.getId() != geneSelection.getSelectedNode())) {
            String id = cand.getId();
            geneSelection.setSelectedNode(id);
            geneSelection.notifyObservers();
        } else {
            setSelectedNode(drawer.getNodeById(geneSelection.getSelectedNode()));
        }
    } else {
    // CyLogger.getLogger(GTRView.class).warn(viewName() + "Got an update from unknown " + o);
    }
}

Example 14 with TreeDrawerNode

use of edu.ucsf.rbvi.clusterMaker2.internal.treeview.TreeDrawerNode in project clusterMaker2 by RBVI.

the class GTRView method selectRight.

private void selectRight() {
    if (selectedNode.isLeaf())
        return;
    TreeDrawerNode current = selectedNode;
    selectedNode = current.getRight();
    drawer.paintSingle(offscreenGraphics, getXScaleEq(), getYScaleEq(), destRect, current, false);
    drawer.paintSubtree(offscreenGraphics, getXScaleEq(), getYScaleEq(), destRect, current.getLeft(), false);
    synchMap();
    repaint();
}

Example 15 with TreeDrawerNode

use of edu.ucsf.rbvi.clusterMaker2.internal.treeview.TreeDrawerNode in project clusterMaker2 by RBVI.

the class ATRView method keyPressed.

// method from KeyListener
/**
 *  Arrow keys are used to change the selected node.
 *
 * up selects parent of current.
 * left selects left child.
 * right selects right child
 * down selects child with most descendants.
 */
public void keyPressed(KeyEvent e) {
    if (selectedNode == null) {
        return;
    }
    int c = e.getKeyCode();
    TreeDrawerNode cand = null;
    switch(c) {
        case KeyEvent.VK_UP:
            selectParent();
            break;
        case KeyEvent.VK_LEFT:
            if (selectedNode.isLeaf() == false) {
                selectLeft();
            }
            break;
        case KeyEvent.VK_RIGHT:
            if (selectedNode.isLeaf() == false) {
                selectRight();
            }
            break;
        case KeyEvent.VK_DOWN:
            if (selectedNode.isLeaf() == false) {
                TreeDrawerNode right = selectedNode.getRight();
                TreeDrawerNode left = selectedNode.getLeft();
                if (right.getRange() > left.getRange()) {
                    selectRight();
                } else {
                    selectLeft();
                }
            }
            break;
    }
}