Examples with DependencyParameter es.bsc.compss.types.parameter.DependencyParameter used on opensource projects

Example 6 with DependencyParameter

use of es.bsc.compss.types.parameter.DependencyParameter in project compss by bsc-wdc.

the class NIOAdaptor method receivedTaskDone.

@Override
public void receivedTaskDone(Connection c, NIOTaskResult tr, boolean successful) {
    int taskId = tr.getTaskId();
    if (LOGGER.isDebugEnabled()) {
        LOGGER.debug("Received Task done message for Task " + taskId);
    }
    // Update running jobs
    NIOJob nj = RUNNING_JOBS.remove(taskId);
    // Update information
    List<DataType> taskResultTypes = tr.getParamTypes();
    for (int i = 0; i < taskResultTypes.size(); ++i) {
        DataType newType = taskResultTypes.get(i);
        switch(newType) {
            case PSCO_T:
            case EXTERNAL_OBJECT_T:
                String pscoId = (String) tr.getParamValue(i);
                DependencyParameter dp = (DependencyParameter) nj.getTaskParams().getParameters()[i];
                updateParameter(newType, pscoId, dp);
                break;
            default:
                // We only update information about PSCOs or EXTERNAL_OBJECTS
                break;
        }
    }
    // Update NIO Job
    if (nj != null) {
        // Mark task as finished and release waiters
        JobHistory prevJobHistory = nj.getHistory();
        nj.taskFinished(successful);
        // Retrieve files if required
        if (WORKER_DEBUG || !successful) {
            String jobOut = JOBS_DIR + "job" + nj.getJobId() + "_" + prevJobHistory + ".out";
            String jobErr = JOBS_DIR + "job" + nj.getJobId() + "_" + prevJobHistory + ".err";
            if (LOGGER.isDebugEnabled()) {
                LOGGER.debug("Requesting JobOut " + jobOut + " for Task " + taskId);
                LOGGER.debug("Requesting JobErr " + jobErr + " for Task " + taskId);
            }
            c.receiveDataFile(jobOut);
            c.receiveDataFile(jobErr);
        }
    /*if (!successful) {
                String jobOut = JOBS_DIR + "job" + nj.getJobId() + "_" + newJobHistory + ".out";
                String jobErr = JOBS_DIR + "job" + nj.getJobId() + "_" + newJobHistory + ".err";
                if (LOGGER.isDebugEnabled()) {
                    LOGGER.debug("Requesting JobOut " + jobOut + " for Task " + taskId);
                    LOGGER.debug("Requesting JobErr " + jobErr + " for Task " + taskId);
                }
                c.receiveDataFile(jobOut);
                c.receiveDataFile(jobErr);
            }*/
    }
    // Close connection
    c.finishConnection();
}

Example 7 with DependencyParameter

use of es.bsc.compss.types.parameter.DependencyParameter in project compss by bsc-wdc.

the class GATJob method prepareJob.

private JobDescription prepareJob() throws Exception {
    // Get the information related to the job
    logger.debug("Preparing GAT Job " + this.jobId);
    TaskDescription taskParams = this.taskParams;
    String targetPath = getResourceNode().getInstallDir();
    String targetHost = getResourceNode().getHost();
    String targetUser = getResourceNode().getUser();
    if (userNeeded && !targetUser.isEmpty()) {
        targetUser += "@";
    } else {
        targetUser = "";
    }
    SoftwareDescription sd = new SoftwareDescription();
    sd.setExecutable(targetPath + WORKER_SCRIPT_PATH + WORKER_SCRIPT_NAME);
    ArrayList<String> lArgs = new ArrayList<String>();
    // Common arguments: language working_dir lib_path num_obsolete [obs1... obsN] tracing [event_type task_id
    // slot_id]
    lArgs.add(LANG);
    lArgs.add(getResourceNode().getWorkingDir());
    lArgs.add(getResourceNode().getLibPath());
    LogicalData[] obsoleteFiles = getResource().pollObsoletes();
    if (obsoleteFiles != null) {
        lArgs.add("" + obsoleteFiles.length);
        for (LogicalData ld : obsoleteFiles) {
            String renaming = ld.getName();
            lArgs.add(renaming);
        }
    } else {
        lArgs.add("0");
    }
    // Check sandbox working dir
    boolean isSpecific = false;
    String sandboxDir = null;
    AbstractMethodImplementation absImpl = (AbstractMethodImplementation) this.impl;
    switch(absImpl.getMethodType()) {
        case BINARY:
            BinaryImplementation binaryImpl = (BinaryImplementation) absImpl;
            sandboxDir = binaryImpl.getWorkingDir();
            isSpecific = true;
            break;
        case MPI:
            MPIImplementation mpiImpl = (MPIImplementation) absImpl;
            sandboxDir = mpiImpl.getWorkingDir();
            isSpecific = true;
            break;
        case DECAF:
            DecafImplementation decafImpl = (DecafImplementation) absImpl;
            sandboxDir = decafImpl.getWorkingDir();
            isSpecific = true;
            break;
        case OMPSS:
            OmpSsImplementation ompssImpl = (OmpSsImplementation) absImpl;
            sandboxDir = ompssImpl.getWorkingDir();
            isSpecific = true;
            break;
        case OPENCL:
            OpenCLImplementation openclImpl = (OpenCLImplementation) absImpl;
            sandboxDir = openclImpl.getWorkingDir();
            isSpecific = true;
            break;
        case METHOD:
            sandboxDir = null;
            break;
    }
    if (sandboxDir == null || sandboxDir.isEmpty() || sandboxDir.equals(Constants.UNASSIGNED)) {
        sandboxDir = getResourceNode().getWorkingDir() + File.separator + "sandBox" + File.separator + "job_" + this.jobId;
        isSpecific = false;
    }
    // Processing parameters to get symlinks pairs to create (symlinks) and how to pass parameters in the GAT
    // Job(paramArgs)
    ArrayList<String> symlinks = new ArrayList<>();
    ArrayList<String> paramArgs = new ArrayList<>();
    processParameters(sandboxDir, symlinks, paramArgs);
    // Adding info to create symlinks between renamed files and original names
    lArgs.add(Boolean.toString(isSpecific));
    lArgs.add(sandboxDir);
    if (symlinks.size() > 0) {
        lArgs.add(String.valueOf(symlinks.size()));
        lArgs.addAll(symlinks);
    } else {
        lArgs.add("0");
    }
    lArgs.add(Boolean.toString(Tracer.isActivated()));
    lArgs.add(getHostName());
    if (debug) {
        logger.debug("hostName " + getHostName());
    }
    if (Tracer.isActivated()) {
        // event type
        lArgs.add(String.valueOf(Tracer.getTaskEventsType()));
        // task id
        lArgs.add(String.valueOf(this.taskParams.getId() + 1));
        int slot = Tracer.getNextSlot(targetHost);
        // slot id
        lArgs.add(String.valueOf(slot));
        sd.addAttribute("slot", slot);
    }
    // Language-dependent arguments: taskSandbox_dir app_dir classpath pythonpath debug storage_conf
    // method_impl_type method_impl_params
    // numSlaves [slave1,..,slaveN] numCus
    // has_target num_params par_type_1 par_1 ... par_type_n par_n
    lArgs.add(sandboxDir);
    lArgs.add(getResourceNode().getAppDir());
    lArgs.add(getClasspath());
    lArgs.add(getPythonpath());
    lArgs.add(String.valueOf(debug));
    lArgs.add(STORAGE_CONF);
    lArgs.add(String.valueOf(absImpl.getMethodType()));
    switch(absImpl.getMethodType()) {
        case METHOD:
            MethodImplementation methodImpl = (MethodImplementation) absImpl;
            lArgs.add(methodImpl.getDeclaringClass());
            String methodName = methodImpl.getAlternativeMethodName();
            if (methodName == null || methodName.isEmpty()) {
                methodName = taskParams.getName();
            }
            lArgs.add(methodName);
            break;
        case MPI:
            MPIImplementation mpiImpl = (MPIImplementation) absImpl;
            lArgs.add(mpiImpl.getMpiRunner());
            lArgs.add(mpiImpl.getBinary());
            break;
        case DECAF:
            DecafImplementation decafImpl = (DecafImplementation) absImpl;
            lArgs.add(targetPath + DecafImplementation.SCRIPT_PATH);
            String dfScript = decafImpl.getDfScript();
            if (!dfScript.startsWith(File.separator)) {
                String appPath = getResourceNode().getAppDir();
                dfScript = appPath + File.separator + dfScript;
            }
            lArgs.add(dfScript);
            String dfExecutor = decafImpl.getDfExecutor();
            if (dfExecutor == null || dfExecutor.isEmpty() || dfExecutor.equals(Constants.UNASSIGNED)) {
                dfExecutor = "executor.sh";
            }
            if (!dfExecutor.startsWith(File.separator) && !dfExecutor.startsWith("./")) {
                dfExecutor = "./" + dfExecutor;
            }
            lArgs.add(dfExecutor);
            String dfLib = decafImpl.getDfLib();
            if (dfLib == null || dfLib.isEmpty()) {
                dfLib = Constants.UNASSIGNED;
            }
            lArgs.add(dfLib);
            lArgs.add(decafImpl.getMpiRunner());
            break;
        case OMPSS:
            OmpSsImplementation ompssImpl = (OmpSsImplementation) absImpl;
            lArgs.add(ompssImpl.getBinary());
            break;
        case OPENCL:
            OpenCLImplementation openclImpl = (OpenCLImplementation) absImpl;
            lArgs.add(openclImpl.getKernel());
            break;
        case BINARY:
            BinaryImplementation binaryImpl = (BinaryImplementation) absImpl;
            lArgs.add(binaryImpl.getBinary());
            break;
    }
    // Slave nodes and cus description
    lArgs.add(String.valueOf(slaveWorkersNodeNames.size()));
    lArgs.addAll(slaveWorkersNodeNames);
    lArgs.add(String.valueOf(((MethodResourceDescription) this.impl.getRequirements()).getTotalCPUComputingUnits()));
    // Add parameter arguments already processed
    lArgs.addAll(paramArgs);
    // Conversion vector -> array
    String[] arguments = new String[lArgs.size()];
    arguments = lArgs.toArray(arguments);
    try {
        sd.setArguments(arguments);
    } catch (NullPointerException e) {
        StringBuilder sb = new StringBuilder("Null argument parameter of job " + this.jobId + " " + absImpl.getMethodDefinition() + "\n");
        int i = 0;
        for (Parameter param : taskParams.getParameters()) {
            sb.append("Parameter ").append(i).append("\n");
            DataType type = param.getType();
            sb.append("\t Type: ").append(param.getType()).append("\n");
            if (type == DataType.FILE_T || type == DataType.OBJECT_T) {
                DependencyParameter dPar = (DependencyParameter) param;
                DataAccessId dAccId = dPar.getDataAccessId();
                sb.append("\t Target: ").append(dPar.getDataTarget()).append("\n");
                if (type == DataType.OBJECT_T) {
                    if (dAccId instanceof RAccessId) {
                        sb.append("\t Direction: " + "R").append("\n");
                    } else {
                        // for the worker to know it must write the object to disk
                        sb.append("\t Direction: " + "W").append("\n");
                    }
                }
            } else if (type == DataType.STRING_T) {
                BasicTypeParameter btParS = (BasicTypeParameter) param;
                // Check spaces
                String value = btParS.getValue().toString();
                int numSubStrings = value.split(" ").length;
                sb.append("\t Num Substrings: " + Integer.toString(numSubStrings)).append("\n");
                sb.append("\t Value:" + value).append("\n");
            } else {
                // Basic types
                BasicTypeParameter btParB = (BasicTypeParameter) param;
                sb.append("\t Value: " + btParB.getValue().toString()).append("\n");
            }
            i++;
        }
        logger.error(sb.toString());
        listener.jobFailed(this, JobEndStatus.SUBMISSION_FAILED);
    }
    sd.addAttribute("jobId", jobId);
    // JEA Changed to allow execution in MN
    sd.addAttribute(SoftwareDescription.WALLTIME_MAX, absImpl.getRequirements().getWallClockLimit());
    if (absImpl.getRequirements().getHostQueues().size() > 0) {
        sd.addAttribute(SoftwareDescription.JOB_QUEUE, absImpl.getRequirements().getHostQueues().get(0));
    }
    sd.addAttribute("coreCount", absImpl.getRequirements().getTotalCPUComputingUnits());
    sd.addAttribute("gpuCount", absImpl.getRequirements().getTotalGPUComputingUnits());
    sd.addAttribute("fpgaCount", absImpl.getRequirements().getTotalFPGAComputingUnits());
    sd.addAttribute(SoftwareDescription.MEMORY_MAX, absImpl.getRequirements().getMemorySize());
    // sd.addAttribute(SoftwareDescription.SANDBOX_ROOT, "/tmp/");
    sd.addAttribute(SoftwareDescription.SANDBOX_ROOT, getResourceNode().getWorkingDir());
    sd.addAttribute(SoftwareDescription.SANDBOX_USEROOT, "true");
    sd.addAttribute(SoftwareDescription.SANDBOX_DELETE, "false");
    /*
         * sd.addAttribute(SoftwareDescription.SANDBOX_PRESTAGE_STDIN, "false");
         * sd.addAttribute(SoftwareDescription.SANDBOX_POSTSTAGE_STDOUT, "false");
         * sd.addAttribute(SoftwareDescription.SANDBOX_POSTSTAGE_STDERR, "false");
         */
    if (debug) {
        // Set standard output file for job
        File outFile = GAT.createFile(context, Protocol.ANY_URI.getSchema() + File.separator + JOBS_DIR + "job" + jobId + "_" + this.getHistory() + ".out");
        sd.setStdout(outFile);
    }
    if (debug || usingGlobus) {
        // Set standard error file for job
        File errFile = GAT.createFile(context, Protocol.ANY_URI.getSchema() + File.separator + JOBS_DIR + "job" + jobId + "_" + this.getHistory() + ".err");
        sd.setStderr(errFile);
    }
    Map<String, Object> attributes = new HashMap<String, Object>();
    attributes.put(RES_ATTR, Protocol.ANY_URI.getSchema() + targetUser + targetHost);
    attributes.put("Jobname", "compss_remote_job_" + jobId);
    ResourceDescription rd = new HardwareResourceDescription(attributes);
    if (debug) {
        logger.debug("Ready to submit job " + jobId + ":");
        logger.debug("  * Host: " + targetHost);
        logger.debug("  * Executable: " + sd.getExecutable());
        StringBuilder sb = new StringBuilder("  - Arguments:");
        for (String arg : sd.getArguments()) {
            sb.append(" ").append(arg);
        }
        logger.debug(sb.toString());
    }
    JobDescription jd = new JobDescription(sd, rd);
    // jd.setProcessCount(method.getRequirements().getProcessorCoreCount());
    return jd;
}

Example 8 with DependencyParameter

use of es.bsc.compss.types.parameter.DependencyParameter in project compss by bsc-wdc.

the class Score method calculateDataLocalityScore.

/**
 * Calculates the number of Parameters in @params located in a given worker
 *
 * @w.
 *
 * @param params
 * @param w
 * @return
 */
public static long calculateDataLocalityScore(TaskDescription params, Worker<?> w) {
    long resourceScore = 0;
    if (params != null) {
        Parameter[] parameters = params.getParameters();
        // are located in the host
        for (Parameter p : parameters) {
            if (p instanceof DependencyParameter && p.getDirection() != Direction.OUT) {
                DependencyParameter dp = (DependencyParameter) p;
                DataInstanceId dId = null;
                switch(dp.getDirection()) {
                    case IN:
                        DataAccessId.RAccessId raId = (DataAccessId.RAccessId) dp.getDataAccessId();
                        dId = raId.getReadDataInstance();
                        break;
                    case INOUT:
                        DataAccessId.RWAccessId rwaId = (DataAccessId.RWAccessId) dp.getDataAccessId();
                        dId = rwaId.getReadDataInstance();
                        break;
                    case OUT:
                        // Cannot happen because of previous if
                        break;
                }
                // Get hosts for resource score
                if (dId != null) {
                    LogicalData dataLD = Comm.getData(dId.getRenaming());
                    if (dataLD != null) {
                        Set<Resource> hosts = dataLD.getAllHosts();
                        for (Resource host : hosts) {
                            if (host == w) {
                                resourceScore++;
                            }
                        }
                    }
                }
            }
        }
    }
    return resourceScore;
}

Example 9 with DependencyParameter

use of es.bsc.compss.types.parameter.DependencyParameter in project compss by bsc-wdc.

the class ExecutionAction method doOutputTransfers.

private final void doOutputTransfers(Job<?> job) {
    // Job finished, update info about the generated/updated data
    Worker<? extends WorkerResourceDescription> w = this.getAssignedResource().getResource();
    for (Parameter p : job.getTaskParams().getParameters()) {
        if (p instanceof DependencyParameter) {
            // OUT or INOUT: we must tell the FTM about the
            // generated/updated datum
            DataInstanceId dId = null;
            DependencyParameter dp = (DependencyParameter) p;
            switch(p.getDirection()) {
                case IN:
                    // FTM already knows about this datum
                    continue;
                case OUT:
                    dId = ((DataAccessId.WAccessId) dp.getDataAccessId()).getWrittenDataInstance();
                    break;
                case INOUT:
                    dId = ((DataAccessId.RWAccessId) dp.getDataAccessId()).getWrittenDataInstance();
                    if (job.getType() == TaskType.SERVICE) {
                        continue;
                    }
                    break;
            }
            String name = dId.getRenaming();
            if (job.getType() == TaskType.METHOD) {
                String targetProtocol = null;
                switch(dp.getType()) {
                    case FILE_T:
                        targetProtocol = DataLocation.Protocol.FILE_URI.getSchema();
                        break;
                    case OBJECT_T:
                        targetProtocol = DataLocation.Protocol.OBJECT_URI.getSchema();
                        break;
                    case PSCO_T:
                        targetProtocol = DataLocation.Protocol.PERSISTENT_URI.getSchema();
                        break;
                    case EXTERNAL_OBJECT_T:
                        // Its value is the PSCO Id
                        targetProtocol = DataLocation.Protocol.PERSISTENT_URI.getSchema();
                        break;
                    default:
                        // Should never reach this point because only
                        // DependencyParameter types are treated
                        // Ask for any_uri just in case
                        targetProtocol = DataLocation.Protocol.ANY_URI.getSchema();
                        break;
                }
                DataLocation outLoc = null;
                try {
                    SimpleURI targetURI = new SimpleURI(targetProtocol + dp.getDataTarget());
                    outLoc = DataLocation.createLocation(w, targetURI);
                } catch (Exception e) {
                    ErrorManager.error(DataLocation.ERROR_INVALID_LOCATION + " " + dp.getDataTarget(), e);
                }
                Comm.registerLocation(name, outLoc);
            } else {
                // Service
                Object value = job.getReturnValue();
                Comm.registerValue(name, value);
            }
        }
    }
}