Examples with LogProgressIndicator eu.esdihumboldt.hale.common.core.io.impl.LogProgressIndicator used on opensource projects

Example 16 with LogProgressIndicator

use of eu.esdihumboldt.hale.common.core.io.impl.LogProgressIndicator in project hale by halestudio.

the class MsSQLServer14Test method readSchema.

/**
 * Reads a schema from a MS SQL database.
 *
 * @return the schema
 * @throws Exception any exception thrown by {@link JDBCSchemaReader}
 */
private Schema readSchema() throws Exception {
    JDBCSchemaReader schemaReader = new JDBCSchemaReader();
    JDBCURI = new MsSqlURIBuilder().createJdbcUri(HOST, DATABASE);
    schemaReader.setSource(new NoStreamInputSupplier(JDBCURI));
    schemaReader.setParameter(JDBCSchemaReader.PARAM_USER, Value.of(USER_NAME));
    schemaReader.setParameter(JDBCSchemaReader.PARAM_PASSWORD, Value.of(PASSWORD));
    // This is set for setting inclusion rule for reading schema
    schemaReader.setParameter(JDBCSchemaReader.SCHEMAS, Value.of(SCHEMA));
    IOReport report = schemaReader.execute(new LogProgressIndicator());
    assertTrue(report.isSuccess());
    assertTrue(report.getErrors().isEmpty());
    Schema schema = schemaReader.getSchema();
    assertNotNull(schema);
    return schema;
}

Example 17 with LogProgressIndicator

use of eu.esdihumboldt.hale.common.core.io.impl.LogProgressIndicator in project hale by halestudio.

the class MsSqlDataReaderTest method readSchema.

/**
 * Reads a schema from a MS SQL database.
 *
 * @return the schema
 * @throws Exception any exception thrown by {@link JDBCSchemaReader}
 */
private Schema readSchema() throws Exception {
    JDBCSchemaReader schemaReader = new JDBCSchemaReader();
    JDBCURI = new MsSqlURIBuilder().createJdbcUri(HOST, DATABASE);
    schemaReader.setSource(new NoStreamInputSupplier(JDBCURI));
    schemaReader.setParameter(JDBCSchemaReader.PARAM_USER, Value.of(USER_NAME));
    schemaReader.setParameter(JDBCSchemaReader.PARAM_PASSWORD, Value.of(PASSWORD));
    // This is set for setting inclusion rule for reading schema
    schemaReader.setParameter(JDBCSchemaReader.SCHEMAS, Value.of(SCHEMA));
    IOReport report = schemaReader.execute(new LogProgressIndicator());
    assertTrue(report.isSuccess());
    assertTrue(report.getErrors().isEmpty());
    Schema schema = schemaReader.getSchema();
    assertNotNull(schema);
    return schema;
}

Example 18 with LogProgressIndicator

use of eu.esdihumboldt.hale.common.core.io.impl.LogProgressIndicator in project hale by halestudio.

the class MsSqlDataReaderTest method readInstances.

/**
 * Reads instances from from a MsAccess database file with the provided
 * schema.
 *
 * @param sourceSchema the schema of the source database
 * @return the read instances
 * @throws Exception any exception thrown by {@link JDBCInstanceReader}
 */
private InstanceCollection readInstances(Schema sourceSchema) throws Exception {
    JDBCInstanceReader instanceReader = new JDBCInstanceReader();
    JDBCURI = new MsSqlURIBuilder().createJdbcUri(HOST, DATABASE);
    instanceReader.setSource(new NoStreamInputSupplier(JDBCURI));
    instanceReader.setSourceSchema(sourceSchema);
    instanceReader.setParameter(JDBCInstanceReader.PARAM_USER, Value.of(USER_NAME));
    instanceReader.setParameter(JDBCInstanceReader.PARAM_PASSWORD, Value.of(PASSWORD));
    // Test instances
    IOReport report = instanceReader.execute(new LogProgressIndicator());
    assertTrue("Data import was not successfull.", report.isSuccess());
    return instanceReader.getInstances();
}

Example 19 with LogProgressIndicator

use of eu.esdihumboldt.hale.common.core.io.impl.LogProgressIndicator in project hale by halestudio.

the class AppSchemaFileWriterTest method loadTestProject.

@BeforeClass
public static void loadTestProject() {
    try {
        URL archiveLocation = AppSchemaFileWriterTest.class.getResource(PROJECT_LOCATION);
        ArchiveProjectReader projectReader = new ArchiveProjectReader();
        projectReader.setSource(new DefaultInputSupplier(archiveLocation.toURI()));
        IOReport report = projectReader.execute(new LogProgressIndicator());
        if (!report.isSuccess()) {
            throw new RuntimeException("project reader execution failed");
        }
        tempDir = projectReader.getTemporaryFiles().iterator().next();
        project = projectReader.getProject();
        assertNotNull(project);
        sourceSchemaSpace = new DefaultSchemaSpace();
        targetSchemaSpace = new DefaultSchemaSpace();
        // load schemas
        List<IOConfiguration> resources = project.getResources();
        for (IOConfiguration resource : resources) {
            String actionId = resource.getActionId();
            String providerId = resource.getProviderId();
            // get provider
            IOProvider provider = null;
            IOProviderDescriptor descriptor = IOProviderExtension.getInstance().getFactory(providerId);
            if (descriptor == null) {
                throw new RuntimeException("Could not load I/O provider with ID: " + resource.getProviderId());
            }
            provider = descriptor.createExtensionObject();
            provider.loadConfiguration(resource.getProviderConfiguration());
            prepareProvider(provider, project, tempDir.toURI());
            IOReport providerReport = provider.execute(new LogProgressIndicator());
            if (!providerReport.isSuccess()) {
                throw new RuntimeException("I/O provider execution failed");
            }
            // TODO: could (should?) be done by an advisor
            if (provider instanceof SchemaReader) {
                Schema schema = ((SchemaReader) provider).getSchema();
                if (actionId.equals(SchemaIO.ACTION_LOAD_SOURCE_SCHEMA)) {
                    sourceSchemaSpace.addSchema(schema);
                } else if (actionId.equals(SchemaIO.ACTION_LOAD_TARGET_SCHEMA)) {
                    targetSchemaSpace.addSchema(schema);
                }
            }
        }
        // load alignment
        List<ProjectFileInfo> projectFiles = project.getProjectFiles();
        for (ProjectFileInfo projectFile : projectFiles) {
            if (projectFile.getName().equals(AlignmentIO.PROJECT_FILE_ALIGNMENT)) {
                AlignmentReader alignReader = new JaxbAlignmentReader();
                alignReader.setSource(new DefaultInputSupplier(projectFile.getLocation()));
                alignReader.setSourceSchema(sourceSchemaSpace);
                alignReader.setTargetSchema(targetSchemaSpace);
                alignReader.setPathUpdater(new PathUpdate(null, null));
                IOReport alignReport = alignReader.execute(new LogProgressIndicator());
                if (!alignReport.isSuccess()) {
                    throw new RuntimeException("alignment reader execution failed");
                }
                alignment = alignReader.getAlignment();
                assertNotNull(alignment);
                break;
            }
        }
    } catch (Exception e) {
        log.error("Exception occurred", e);
        fail("Test project could not be loaded: " + e.getMessage());
    }
}

Example 20 with LogProgressIndicator

use of eu.esdihumboldt.hale.common.core.io.impl.LogProgressIndicator in project hale by halestudio.

the class AppSchemaIsolatedWorkspacesMappingTest method loadAlignment.

private static Alignment loadAlignment(AlignmentReader alignReader, String resource) throws Exception {
    alignReader.setSource(new DefaultInputSupplier(AppSchemaIsolatedWorkspacesMappingTest.class.getResource(resource).toURI()));
    alignReader.setSourceSchema(sourceSchemaSpace);
    alignReader.setTargetSchema(targetSchemaSpace);
    alignReader.setPathUpdater(new PathUpdate(null, null));
    IOReport report = alignReader.execute(new LogProgressIndicator());
    assertTrue(report.isSuccess());
    assertTrue("Errors are contained in the report", report.getErrors().isEmpty());
    return alignReader.getAlignment();
}